View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13044_low_2 (Length: 964)
Name: NF13044_low_2
Description: NF13044
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13044_low_2 |
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Alignment Details
Target: chr6 (Bit Score: 725; Significance: 0; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 725; E-Value: 0
Query Start/End: Original strand, 208 - 948
Target Start/End: Complemental strand, 34860584 - 34859844
Alignment:
| Q |
208 |
aattgatctccctacttaaatacaacaaatctttttaccacttctctgaaaaagcagacttcaaagagtggtatttggaatttttctcggttgttactct |
307 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34860584 |
aattgatctccctactcaaatacaacaaatctttttaccacttctctgaaaaagcagacttcaaagagtggtatttggaatttttctcggttgttactct |
34860485 |
T |
|
| Q |
308 |
gtgagttagttctgttgttaatttgaatattgtggcatgtaagagccgcctattctaaagatattagctggcttgccttgacatgatggataatttctct |
407 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34860484 |
gtgagttagttctgttgttaatttgaatattgtggcatgtaagagtcacctattctaaagatattagctggcttgccttgacatgatggataatttctct |
34860385 |
T |
|
| Q |
408 |
attttaacagtcttccctacataaatactactctatctgttgcataaatactctcggtgatgaatccaccaagaaaatttgcaagtaaaccttcagaaag |
507 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34860384 |
attttaacagtcttccctacataaatactactctatctgttgcataaatactctcggtgatgaatccaccaagaaaatttgcaagtaaaccttcagaaag |
34860285 |
T |
|
| Q |
508 |
gaccaattttgttttttaatcctagtactacataactttgtttgcacttgttgtattgaatgtcattcattacaagaatcaaatatttgcaagtcattgg |
607 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34860284 |
gaccaattttgttttttaatcctagtactacataactttgtttgcacttgttgtattgaatgtcattcattacaagaatcaaatatttgcaagtcattgg |
34860185 |
T |
|
| Q |
608 |
atttagactatgcttaaaactgatatcatatttcggaagctggaatggactgtgattataggttccttctcatgtgctgatgatagcgctacttttcccg |
707 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34860184 |
atttagactatgcttaaaactgatatcatatttcggaagctggaatggactgtgattataggttccttctcatgtgctgatgatagcgctacttttcccg |
34860085 |
T |
|
| Q |
708 |
ttacttcacttgaggatgctcgtagaattccataggatctattgtctcttatgtgtaggtgcatatctgaaactcaccagatgtgtgttactccaacgga |
807 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34860084 |
ttacttcacttgaggatgctcgtagaattccataggatctattgtcgcttatgtgtaggtgcatatctgaaactcaccagatgtgtgttactccaacgga |
34859985 |
T |
|
| Q |
808 |
gttcatacgtaggaagctagatgtttttgaagatccttattgctcgtcttctgtgtttcttctttaatttacaaagtcctggaaaagtagaagatggaag |
907 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34859984 |
gttcatacgtaggaagctagatgtttttgaagatccttattgctcgtcttctgtgtttcttctttaatttacaaagtcctggaaaagtagaagatggaag |
34859885 |
T |
|
| Q |
908 |
ccacttcaataacacaaatgttgaagggtttttgtgatact |
948 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||| |
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| T |
34859884 |
ccacttcaataacacaaatgttgaagggtttttgtgatact |
34859844 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 157; E-Value: 6e-83
Query Start/End: Original strand, 20 - 184
Target Start/End: Complemental strand, 34860764 - 34860600
Alignment:
| Q |
20 |
ctttagttatgttgaagttcatatatgacatgtgaacttatattttagcttattcaaattgttgtgcacttgtttgactcaaaaatgataatatttttgt |
119 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34860764 |
ctttagttatgttgaagttcatatatgacatgtgaacttatattttagcttattcaaattgttgtgcacttgtttgactcaaaaatgataatatttttgt |
34860665 |
T |
|
| Q |
120 |
ttgaaagtggattatagatttagggtgcagggaaatacatgatgaagcttatatgtgtaagttga |
184 |
Q |
| |
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| T |
34860664 |
ttgaaagtggattatagatttagcctgcagggaaatacatgatgaagcttatatgtgtaagttga |
34860600 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 31 - 121
Target Start/End: Complemental strand, 34860878 - 34860788
Alignment:
| Q |
31 |
ttgaagttcatatatgacatgtgaacttatattttagcttattcaaattgttgtgcacttgtttgactcaaaaatgataatatttttgttt |
121 |
Q |
| |
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|||||||| ||||| ||||| ||||| ||||| ||||||||| ||||||||| ||||||||||||| |||||| ||||| |||||||| |
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| T |
34860878 |
ttgaagttgatatacgacatatgaacctatatattagcttatgaaaattgttgctcacttgtttgactaaaaaattctaataattttgttt |
34860788 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 21 - 145
Target Start/End: Complemental strand, 19745765 - 19745640
Alignment:
| Q |
21 |
tttagttatgttgaagttcatatatgacatgtgaacttatattttagcttattcaaattgttgtgcacttgtttgactcaaaaatgataatatttttg-t |
119 |
Q |
| |
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|||||||||||||||||| |||||||| || | ||||||||| | ||||| ||||| ||||| |||||||||| ||| |||||||||| || | | | |
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| T |
19745765 |
tttagttatgttgaagtttatatatgatatattaacttatatatcgtcttatgcaaatggttgtttacttgtttgattcataaatgataatgttgtagtt |
19745666 |
T |
|
| Q |
120 |
ttgaaagtggattatagatttagggt |
145 |
Q |
| |
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|| |||| |||| ||||||||||||| |
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| T |
19745665 |
ttaaaagaggatgatagatttagggt |
19745640 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 47; Significance: 2e-17; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 859 - 948
Target Start/End: Complemental strand, 23133073 - 23132981
Alignment:
| Q |
859 |
tgtgtttcttctttaatttac---aaagtcctggaaaagtagaagatggaagccacttcaataacacaaatgttgaagggtttttgtgatact |
948 |
Q |
| |
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|||||||||| |||| ||||| |||||| || ||||||||||||||||||| |||||||| |||||| |||||||||| |||||||||||| |
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| T |
23133073 |
tgtgtttcttgtttattttaccgaaaagtcgtgcaaaagtagaagatggaagctacttcaattacacaattgttgaagggcttttgtgatact |
23132981 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000006; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 208 - 294
Target Start/End: Original strand, 2242506 - 2242594
Alignment:
| Q |
208 |
aattgatctccctacttaaatacaacaaatctttttaccacttctctgaaaaagcag--acttcaaagagtggtatttggaatttttct |
294 |
Q |
| |
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||||||||||| |||| ||||||||| |||||||| ||||||||||| | ||||||| | ||||||||||||||| || || |||||| |
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| T |
2242506 |
aattgatctccttactcaaatacaactaatcttttgaccacttctctaacaaagcagataattcaaagagtggtatgtgcaagttttct |
2242594 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 93 - 167
Target Start/End: Original strand, 2242244 - 2242318
Alignment:
| Q |
93 |
ttgactcaaaaatgataatatttttgtttgaaagtggattatagatttagggtgcagggaaatacatgatgaagc |
167 |
Q |
| |
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||||||||||||| |||||||||||||| ||| |||| ||||||||||| || | |||||||||||||||| |
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| T |
2242244 |
ttgactcaaaaattctaatatttttgttttgaagaggatcatagatttaggatggatacaaatacatgatgaagc |
2242318 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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