View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13044_low_23 (Length: 395)
Name: NF13044_low_23
Description: NF13044
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13044_low_23 |
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Alignment Details
Target: chr7 (Bit Score: 358; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 1 - 391
Target Start/End: Complemental strand, 33675751 - 33675361
Alignment:
| Q |
1 |
ctggttctgagcaaccaccaaacttgacacattacacatatatcagtggaacaagccttatgcatcctacgaacctacaatattattattatactattaa |
100 |
Q |
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| T |
33675751 |
ctggttctgagcaaccaccacacttgacacattagacatatatcagtggaacaagccttatgcatcctacgaacctacaatattattattatactattaa |
33675652 |
T |
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| Q |
101 |
ttttattaagtaccacagatcaaataaaagagttgacttcagagggagcttttgatttccaaagtgattaatcaagaagaaaaatagcccaactcaaccc |
200 |
Q |
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| T |
33675651 |
ttttattaagtaccacagatcaaataaaagagttgacttcagagggagcttttgatttccaaagtgattaatcaagaagaaaaatagcccaactcaaccc |
33675552 |
T |
|
| Q |
201 |
aaagaatgcgtaaggaattatatacaacggcaagctttgcaagttgcaacaacnnnnnnncagcccagaaagatcaaaggactaattccttttattcatg |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
33675551 |
aaagaatgcgtaaggaattatatacaacggcaagctttgcaagttgcaacaacaaaaaaacagcccagaaagatcaaaggactaattccttttattcatg |
33675452 |
T |
|
| Q |
301 |
ttacaagataaatgaatagaatcaaatttattatgtatgtaagaattgactggtcttagaaaagcaaaagaactttggatattcttcgaca |
391 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
33675451 |
ttacaagataaatgaatagaatcaaatttattatgtatgtaagaattgactggtcttagaaaagcaaaagaactttggatattcttggaca |
33675361 |
T |
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