View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13044_low_24 (Length: 377)
Name: NF13044_low_24
Description: NF13044
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13044_low_24 |
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Alignment Details
Target: chr3 (Bit Score: 257; Significance: 1e-143; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 15 - 364
Target Start/End: Complemental strand, 38365638 - 38365304
Alignment:
| Q |
15 |
atcagtgtaaattaattttgaataaactatctatttagtctaag-ttatcactctttcttctatttaacttctaaatcatataaatataataaagtatat |
113 |
Q |
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| T |
38365638 |
atcagtgtaaattaattttgaataaactatctatttagtctaaggttatcactctttcttctatttaacttctaaatcatataaatataataaagtatat |
38365539 |
T |
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| Q |
114 |
gaaatccgtcaatttaatctcgaaaaaattgagtatctgccaacttaatcgttaacatcataataataattccatactactttgggacgtagattttaga |
213 |
Q |
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| T |
38365538 |
gaaatccgtcaatttagtctcgaaaaaattgagtatctgccaacttaattgttaacataataatagt--------------ttgtgacgtagattttaga |
38365453 |
T |
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| Q |
214 |
ttgaatattataggatgctaaatttccacgttagtggtaggtattgtgatatactctttggattatttaattggcttatgtccacaaacactttctatag |
313 |
Q |
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| T |
38365452 |
ttgaatattataggatgctaaatttccacgttagtggtaggtattgtgata--ctctttggattatttaactggcttatgtccaaaaacactttctatag |
38365355 |
T |
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| Q |
314 |
tttgtacttttacacgccaattttctatccatatcaatgatatcatattat |
364 |
Q |
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| T |
38365354 |
tttgtacttttacacgccaattttctatccatatcaatgatatcatattat |
38365304 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 92 - 129
Target Start/End: Original strand, 38229313 - 38229350
Alignment:
| Q |
92 |
atataaatataataaagtatatgaaatccgtcaattta |
129 |
Q |
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| T |
38229313 |
atataaatataataaactatatgaaatccgtcaattta |
38229350 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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