View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13044_low_25 (Length: 370)
Name: NF13044_low_25
Description: NF13044
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13044_low_25 |
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| [»] scaffold0941 (1 HSPs) |
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| [»] scaffold0098 (2 HSPs) |
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| [»] scaffold0597 (1 HSPs) |
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| [»] scaffold0019 (1 HSPs) |
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| [»] scaffold0011 (1 HSPs) |
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Alignment Details
Target: scaffold0941 (Bit Score: 312; Significance: 1e-176; HSPs: 1)
Name: scaffold0941
Description:
Target: scaffold0941; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 18 - 354
Target Start/End: Original strand, 1425 - 1761
Alignment:
| Q |
18 |
catggatttcagatggtgacaagtnnnnnnnctaagaaagctgaaaagagagctgcattgctgaagagttcaaaatcaaagccttatatcacaagatcaa |
117 |
Q |
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|||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1425 |
catgaatttcagatggtgacaagtaaaacaactaagaaagctgaaaagagagctgcattgctgaagagttcaaaatcaaagccttatatcacaagatcaa |
1524 |
T |
|
| Q |
118 |
aggttggtgctcccaagccttttagatgaagtgcctttattggaacttaagaggtttagctaattctcctacaaaattagctcttaaaaaactattatct |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1525 |
aggttggtgctcccaagccttttagatgaagtgcctttattggaacttaagaggtttagctaattctcctacaaaattagctcttaaaaaactattatct |
1624 |
T |
|
| Q |
218 |
aaatataaacctgatgtttgtttcatttctgaaccttggatgcttgtgtctgatttgtcacctagatggcttcttaatctaggtcttaaagtgttttgtg |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1625 |
aaatataaacctgatgtttgtttcatttctgaaccttggatgcttgtgtctgatttgtcacctagatggcttcttaatctaggtcttaaagtgttttgtg |
1724 |
T |
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| Q |
318 |
ttaatgatagaaactctttaatccctaatctctggtg |
354 |
Q |
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||||||||||||||||||||||||||||||||||||| |
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| T |
1725 |
ttaatgatagaaactctttaatccctaatctctggtg |
1761 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0098 (Bit Score: 212; Significance: 1e-116; HSPs: 2)
Name: scaffold0098
Description:
Target: scaffold0098; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 18 - 286
Target Start/End: Complemental strand, 36693 - 36425
Alignment:
| Q |
18 |
catggatttcagatggtgacaagtnnnnnnnctaagaaagctgaaaagagagctgcattgctgaagagttcaaaatcaaagccttatatcacaagatcaa |
117 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
36693 |
catggatttcagatggtgacaagtaaaacaactaagaaagctgaaaagagagctgcattgttgaagagttcaaaatcaaagccttatatcacaagatcaa |
36594 |
T |
|
| Q |
118 |
aggttggtgctcccaagccttttagatgaagtgcctttattggaacttaagaggtttagctaattctcctacaaaattagctcttaaaaaactattatct |
217 |
Q |
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||||| |||||||||||| ||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
36593 |
aggttcgtgctcccaagcattttatatgaagtgcatttattggaacttaagaggtttagctaattctcctacaaaattagctcttaaaaaactattattt |
36494 |
T |
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| Q |
218 |
aaatataaacctgatgtttgtttcatttctgaaccttggatgcttgtgtctgatttgtcacctagatgg |
286 |
Q |
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| |||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||| |
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| T |
36493 |
acatataaacctgatgtttgtttcatttatgaaccctggatgcttgtgtctgatttgtcacctagatgg |
36425 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0098; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 281 - 354
Target Start/End: Complemental strand, 33533 - 33460
Alignment:
| Q |
281 |
agatggcttcttaatctaggtcttaaagtgttttgtgttaatgatagaaactctttaatccctaatctctggtg |
354 |
Q |
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||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33533 |
agatggctttataatctaggtctcaaagtgttttgtgttaatgatagaaactctttaatccctaatctctggtg |
33460 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 119; Significance: 1e-60; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 96 - 318
Target Start/End: Complemental strand, 15090971 - 15090749
Alignment:
| Q |
96 |
aagccttatatcacaagatcaaaggttggtgctcccaagccttttagatgaagtgcctttattggaacttaagaggtttagctaattctcctacaaaatt |
195 |
Q |
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|||||||||||||||||||||||||||||||| ||||| ||||| ||||||||||| |||| ||||| |||||||||||||||||||| ||||| ||||| |
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| T |
15090971 |
aagccttatatcacaagatcaaaggttggtgcccccaaacctttcagatgaagtgcttttactggaatttaagaggtttagctaattcacctacgaaatt |
15090872 |
T |
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| Q |
196 |
agctcttaaaaaactattatctaaatataaacctgatgtttgtttcatttctgaaccttggatgcttgtgtctgatttgtcacctagatggcttcttaat |
295 |
Q |
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||||||||||||| ||||||||||||| ||||| ||| |||| || || |||||||| |||||||| |||||| || | || |||||||||||| ||| |
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| T |
15090871 |
agctcttaaaaaattattatctaaatacaaaccagatatttgctttatatctgaaccctggatgctggtgtctaatctatcttctagatggcttcaaaat |
15090772 |
T |
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| Q |
296 |
ctaggtcttaaagtgttttgtgt |
318 |
Q |
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|||||||| | |||||||||||| |
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| T |
15090771 |
ctaggtctcagagtgttttgtgt |
15090749 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 59; Significance: 6e-25; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 81 - 199
Target Start/End: Complemental strand, 20970125 - 20970007
Alignment:
| Q |
81 |
aagagttcaaaatcaaagccttatatcacaagatcaaaggttggtgctcccaagccttttagatgaagtgcctttattggaacttaagaggtttagctaa |
180 |
Q |
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||||||||||||||| | |||||| |||| | ||||||||||||| ||||| ||| | |||||||||| ||||||||||| |||||||||||||||| |
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| T |
20970125 |
aagagttcaaaatcataaccttatctcaccatatcaaaggttggtaaacccaaacctgtcagatgaagtgtttttattggaacctaagaggtttagctaa |
20970026 |
T |
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| Q |
181 |
ttctcctacaaaattagct |
199 |
Q |
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|||||||| |||||||||| |
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| T |
20970025 |
ttctcctaaaaaattagct |
20970007 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 47; Significance: 9e-18; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 111 - 199
Target Start/End: Original strand, 30411343 - 30411427
Alignment:
| Q |
111 |
agatcaaaggttggtgctcccaagccttttagatgaagtgcctttattggaacttaagaggtttagctaattctcctacaaaattagct |
199 |
Q |
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||||||||||||||| ||||||| |||||||||||| |||| ||||||||||| ||||||||||||||| |||| |||||||||||| |
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| T |
30411343 |
agatcaaaggttggtcctcccaaaccttttagatga-gtgc---tattggaacttcagaggtttagctaatactcccacaaaattagct |
30411427 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0597 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0597
Description:
Target: scaffold0597; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 113 - 198
Target Start/End: Original strand, 3736 - 3821
Alignment:
| Q |
113 |
atcaaaggttggtgctcccaagccttttagatgaagtgcctttattggaacttaagaggtttagctaattctcctacaaaattagc |
198 |
Q |
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|
||||||||||||||| ||| ||||| | ||||||||||| |||||||| | ||||| || ||||||||||| ||||||||||| |
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|
| T |
3736 |
atcaaaggttggtgcatccagacctttcaaatgaagtgcctatattggaatcttagagggttggctaattctcccacaaaattagc |
3821 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 143 - 204
Target Start/End: Complemental strand, 22166158 - 22166097
Alignment:
| Q |
143 |
atgaagtgcctttattggaacttaagaggtttagctaattctcctacaaaattagctcttaa |
204 |
Q |
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||||||||| |||| |||||| | || ||||||||||||||||| | ||||||||||||||| |
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| T |
22166158 |
atgaagtgcttttactggaaccttaggggtttagctaattctcccataaaattagctcttaa |
22166097 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0019 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0019
Description:
Target: scaffold0019; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 129 - 177
Target Start/End: Complemental strand, 140556 - 140508
Alignment:
| Q |
129 |
cccaagccttttagatgaagtgcctttattggaacttaagaggtttagc |
177 |
Q |
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||||| |||||||||||||| ||||||||||||| ||||||| ||||| |
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|
| T |
140556 |
cccaaaccttttagatgaagatcctttattggaacctaagaggcttagc |
140508 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0011 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0011
Description:
Target: scaffold0011; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 135 - 183
Target Start/End: Complemental strand, 49731 - 49683
Alignment:
| Q |
135 |
ccttttagatgaagtgcctttattggaacttaagaggtttagctaattc |
183 |
Q |
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|||||||||||||| |||||||||||| |||| |||||||||||||| |
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| T |
49731 |
ccttttagatgaaggtactttattggaacataaggggtttagctaattc |
49683 |
T |
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