View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13044_low_38 (Length: 276)
Name: NF13044_low_38
Description: NF13044
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13044_low_38 |
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Alignment Details
Target: chr7 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 1 - 259
Target Start/End: Original strand, 12824035 - 12824293
Alignment:
| Q |
1 |
gaacagtaatagaaaatggcgccgaatgcccacattgggcaagcatttgagcacaacgatttgcctttcttagagaagtaatatgtagatttcttggaga |
100 |
Q |
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| T |
12824035 |
gaacagtaatagaaaaaggcgccgaatgcccacattgggcaagcatttgagcacaacgatttgccttgcttagagaagtaatatgtagatttcttggaga |
12824134 |
T |
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| Q |
101 |
agaaggatcaaaggagtataagtggtatgacctttcttggccatatgaaaaagagcaagagaatcggtttcaaagacgacctctataacatccaaatcac |
200 |
Q |
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| T |
12824135 |
agaaggatcaaatgagtataagtggtatgacctttcttggccatatgaaaaagagcaagagaatcggtttcaaagacgacctctataacacccaaatcac |
12824234 |
T |
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| Q |
201 |
gagcaagatagagaccgcttcgaaggtcccaagcttcagcaaatagaggtactagaact |
259 |
Q |
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| T |
12824235 |
gagcaagatagagaccgcttcgaaggtcccaagcatcagcaaatagaggtactagaact |
12824293 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 88 - 163
Target Start/End: Original strand, 21182286 - 21182361
Alignment:
| Q |
88 |
gatttcttggagaagaaggatcaaaggagtataagtggtatgacctttcttggccatatgaaaaagagcaagagaa |
163 |
Q |
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| T |
21182286 |
gatttcgttgagcagaagaatcaaaggagtataaatggtatggcctttcatgaccatatgagaaagagcaagagaa |
21182361 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 88 - 163
Target Start/End: Complemental strand, 27144574 - 27144499
Alignment:
| Q |
88 |
gatttcttggagaagaaggatcaaaggagtataagtggtatgacctttcttggccatatgaaaaagagcaagagaa |
163 |
Q |
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| T |
27144574 |
gatttcgttgagcagaagaatcaaaggagtataaatggtatggcctttcatgaccatatgagaaagagcaagagaa |
27144499 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 97 - 226
Target Start/End: Complemental strand, 33172988 - 33172858
Alignment:
| Q |
97 |
gagaagaaggatcaaaggagtataagtggtatgacc-tttcttggccatatgaaaaagagcaagagaatcggtttcaaagacgacctctataacatccaa |
195 |
Q |
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| T |
33172988 |
gagaagaaggattaaatgagtatatgtggtatggccttttcttgaccatatacaaaggagcaagagagtcgatctcaaagacaacgtttgtaagacctaa |
33172889 |
T |
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| Q |
196 |
atcacgagcaagatagagaccgcttcgaagg |
226 |
Q |
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| T |
33172888 |
atcacgggcaagatagataccgctgcgaagg |
33172858 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 107 - 159
Target Start/End: Original strand, 31644648 - 31644700
Alignment:
| Q |
107 |
atcaaaggagtataagtggtatgacctttcttggccatatgaaaaagagcaag |
159 |
Q |
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| T |
31644648 |
atcaaaggagtacaagtggcatgacctttcatggccatatgaaaaagaccaag |
31644700 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 75 - 136
Target Start/End: Original strand, 33546894 - 33546955
Alignment:
| Q |
75 |
gaagtaatatgtagatttcttggagaagaaggatcaaaggagtataagtggtatgacctttc |
136 |
Q |
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| T |
33546894 |
gaagtaaaatgtagatttcattgagaaaaatgatcaaagaagtatacgtggtatgatctttc |
33546955 |
T |
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