View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13044_low_4 (Length: 770)
Name: NF13044_low_4
Description: NF13044
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13044_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 263; Significance: 1e-146; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 16 - 322
Target Start/End: Original strand, 22517353 - 22517659
Alignment:
| Q |
16 |
acctgatgcatcccaaaaagttatggctccattatggtgtccagttatgtacaagtttttgatgtttgaaaatccagagaagttggtagaattcaaatta |
115 |
Q |
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| T |
22517353 |
acctgatgcatcccaaaaagttatgcctccattatggtgtccagttatgtacaagtttttgatgtttgaaaatccagagaagttggtagaattcaagtta |
22517452 |
T |
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| Q |
116 |
atcccacctttgtggtttgtttcaattgaaataagttgtggatgattttttatcatctgattgtaatactcatctgcagaataaaacacaccggtgttgt |
215 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
22517453 |
atcccacctttgtggtttgtttcaattgaaacaagttgtggatgatttttgatcatctgactgtaatactcatctgcagaataaaacacaccggtgttgt |
22517552 |
T |
|
| Q |
216 |
tggagatgaatatttctatggtggtgatgcttgaataaacaaatggtatcctcaccataatttcctttggtaatgaggaagttgacttagattggcctct |
315 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||| |
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| T |
22517553 |
tggagatgttcttttctatggtggtgatgcttgaataaacaaatggtatcctcaccataatttcctttggtaaggagggagttgacttagattggcctct |
22517652 |
T |
|
| Q |
316 |
caattga |
322 |
Q |
| |
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||||||| |
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| T |
22517653 |
caattga |
22517659 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 319 - 547
Target Start/End: Complemental strand, 37191548 - 37191319
Alignment:
| Q |
319 |
ttgagtgtatagccgagcatcataaaaactccaccattcaaaagctgcccacggcggagccattgtacacggcaatgagaacaacgaatttgaaacagaa |
418 |
Q |
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| T |
37191548 |
ttgagtgtatagccgagcatcataaaaactccaccattcaaaagctgcccacgacggagccattgtacacggcaatgagaacaacgaattcgaaacataa |
37191449 |
T |
|
| Q |
419 |
aattgtgggagaaacgacagcgg-catcaatccaccgggatcgaaacatttgagacagtcaaagcttaacggaactgattgtgcaaacacattgaagtgg |
517 |
Q |
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||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||| |
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| T |
37191448 |
aattgtgggagaaacgacagcggaaatcaatccatggggatcgaaacatttgagacagtcgaagcttagcggaactgattgtgcaaacacattgaagtgg |
37191349 |
T |
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| Q |
518 |
ttaggtgagagtgattgaaattttacctca |
547 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
37191348 |
ttaggtgagagtgattgaaattttacctca |
37191319 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 181; E-Value: 2e-97
Query Start/End: Original strand, 319 - 547
Target Start/End: Original strand, 22517893 - 22518121
Alignment:
| Q |
319 |
ttgagtgtatagccgagcatcataaaaactccaccattcaaaagctgcccacggcggagccattgtacacggcaatgagaacaacgaatttgaaacagaa |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
22517893 |
ttgagtgtatagccgagcatcataaaaactccaccattcaaatgctgcccacggcggagccattgtacacggcaatgagaacaacgaatttgaaatagaa |
22517992 |
T |
|
| Q |
419 |
aattgtgggagaaacgacagcggcatcaatccaccgggatcgaaacatttgagacagtcaaagcttaacggaactgattgtgcaaacacattgaagtggt |
518 |
Q |
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|||||||||| |||||| ||||| ||| ||||||||||||||||||||||||||||||| |||||||| |||| ||||||||||||||| | |||||||| |
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| T |
22517993 |
aattgtgggaaaaacgaaagcggtatcgatccaccgggatcgaaacatttgagacagtcgaagcttaaaggaattgattgtgcaaacacttggaagtggt |
22518092 |
T |
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| Q |
519 |
taggtgagagtgattgaaattttacctca |
547 |
Q |
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||| ||||||||||||||||||||||||| |
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| T |
22518093 |
tagatgagagtgattgaaattttacctca |
22518121 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 431 - 742
Target Start/End: Original strand, 13885153 - 13885464
Alignment:
| Q |
431 |
aacgacagcggcatcaatccaccgggatcgaaacatttgagacagtcaaagcttaacggaactgattgtgcaaacacattgaagtggttaggtgagagtg |
530 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||| ||| |
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| T |
13885153 |
aacgacagcggcatcgatccaccgggatcgaaacatttgagacagtcgaagcttaacagaactgattgtgcaaacacattgaagtggttaggtgaaagta |
13885252 |
T |
|
| Q |
531 |
attgaaattttacctcacccaattgttgttctaaatagacattcgttcctattggaagagtgttggcaatctcttgataggtgaatttgaagtttgacca |
630 |
Q |
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|||||||||||||||||||||||||||||| | |||||| | ||||||||||||||||||||||||||||||||||| ||||||| |||||||||||| |
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| T |
13885253 |
attgaaattttacctcacccaattgttgttttgaatagaaagtcgttcctattggaagagtgttggcaatctcttgacgggtgaatctgaagtttgacct |
13885352 |
T |
|
| Q |
631 |
cggcgtttgttgtttacaaatgaaagattcctcagaatcttcaacaatttcattatcttctacatgtttcgctggtatcagagatcgttgggaatcacct |
730 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| ||||| ||||||||||||| |
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| T |
13885353 |
cggcgtttgttgtttacaactgaaagattcctcagaatcttcaacaatttcattatcttctacatgttttgctgggatccgagattgttgggaatcaccc |
13885452 |
T |
|
| Q |
731 |
tgtgaattttca |
742 |
Q |
| |
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|||||||||||| |
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| T |
13885453 |
tgtgaattttca |
13885464 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 95; Significance: 4e-46; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 19 - 185
Target Start/End: Original strand, 9710393 - 9710559
Alignment:
| Q |
19 |
tgatgcatcccaaaaagttatggctccattatggtgtccagttatgtacaagtttttgatgtttgaaaatccagagaagttggtagaattcaaattaatc |
118 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||| |||| ||| |||| | |
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| T |
9710393 |
tgatgcatcccaaaatgttatggctccattatggtgtccagttatgtacaagtttttaatgtttgaaaatccagtgaagttggcagaactcaggttaagc |
9710492 |
T |
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| Q |
119 |
ccacctttgtggtttgtttcaattgaaataagttgtggatgattttttatcatctgattgtaatact |
185 |
Q |
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||| ||||||| ||||||||||||| |||||| ||||||| | |||| ||||| ||| | ||||||| |
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| T |
9710493 |
ccatctttgtgatttgtttcaattggaataagctgtggataacttttgatcatttgactataatact |
9710559 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 459 - 545
Target Start/End: Complemental strand, 33457255 - 33457169
Alignment:
| Q |
459 |
cgaaacatttgagacagtcaaagcttaacggaactgattgtgcaaacacattgaagtggttaggtgagagtgattgaaattttacct |
545 |
Q |
| |
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|||||||||||| | |||| || ||||| |||| ||||| || | |||||||||| |||||| |||||||||| ||||||||||| |
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| T |
33457255 |
cgaaacatttgacagagtccaaccttaaaggaattgattatgaagacacattgaatgtgttaggcgagagtgattaaaattttacct |
33457169 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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