View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13044_low_45 (Length: 238)
Name: NF13044_low_45
Description: NF13044
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13044_low_45 |
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Alignment Details
Target: chr4 (Bit Score: 220; Significance: 1e-121; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 7753655 - 7753432
Alignment:
| Q |
1 |
tttacacttgataaatgccataaattggtagggtttgatatatccattggatttatgcctaatatggtgtatttaagtgcttctgagtgcactgagctta |
100 |
Q |
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| T |
7753655 |
tttacacttgataaatgccataaattggtaaggtttgatatatccattggatttatgcctaatatggtgtatttaagtgcttctgagtgcactgagctta |
7753556 |
T |
|
| Q |
101 |
aaagttttgtgccaaaaatatatttaccctcccttcaagtgctttcattcaattactgcaaaaaatttgaatacttccctcaagtaatgcagaagatgga |
200 |
Q |
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| T |
7753555 |
aaagttttgtgccaaaaatatatttaccctcccttcaagtgctttcattcaattactgcaaaaaatttgaatacttccctcaagtaatgcagaagatgga |
7753456 |
T |
|
| Q |
201 |
taagccattaaagattcacatgat |
224 |
Q |
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|||||||||||||||||||||||| |
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| T |
7753455 |
taagccattaaagattcacatgat |
7753432 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 8 - 224
Target Start/End: Complemental strand, 7760718 - 7760502
Alignment:
| Q |
8 |
ttgataaatgccataaattggtagggtttgatatatccattggatttatgcctaatatggtgtatttaagtgcttctgagtgcactgagcttaaaagttt |
107 |
Q |
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||||||||||||||||| | ||| ||||||| | ||||| ||||||| |||||||| ||||||||||||||||||| | ||||| |||||| |||||||| |
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| T |
7760718 |
ttgataaatgccataaacttgtaaggtttgaaaaatccaatggatttttgcctaatctggtgtatttaagtgcttcagggtgcagtgagctcaaaagttt |
7760619 |
T |
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| Q |
108 |
tgtgccaaaaatatatttaccctcccttcaagtgctttcattcaattactgcaaaaaatttgaatacttccctcaagtaatgcagaagatggataagcca |
207 |
Q |
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|||||||||||| ||||| ||||||||||||| ||||||||| |||| ||||||||||||| || ||||||| ||||||||||| ||||||||||||||| |
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| T |
7760618 |
tgtgccaaaaatgtatttgccctcccttcaagagctttcatttaatttctgcaaaaaatttaaacacttcccgcaagtaatgcaaaagatggataagcca |
7760519 |
T |
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| Q |
208 |
ttaaagattcacatgat |
224 |
Q |
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||||||||||||||||| |
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| T |
7760518 |
ttaaagattcacatgat |
7760502 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 7837158 - 7836935
Alignment:
| Q |
1 |
tttacacttgataaatgccataaattggtagggtttgatatatccattggatttatgcctaatatggtgtatttaagtgcttctgagtgcactgagctta |
100 |
Q |
| |
|
||||| |||||||| ||||||||| ||||| |||||||| |||| ||||||||||||||||| |||||||||||||||| || | |||||||| || | |
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| T |
7837158 |
tttactcttgataattgccataaactggtaatgtttgataaatccgttggatttatgcctaatctggtgtatttaagtgcgtcgggatgcactgaactca |
7837059 |
T |
|
| Q |
101 |
aaagttttgtgccaaaaatatatttaccctcccttcaagtgctttcattcaattactgcaaaaaatttgaatacttccctcaagtaatgcagaagatgga |
200 |
Q |
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|||||||||||||||| || ||||| ||||||||||||||| ||||||| |||| |||||||||||||||| ||||||| || ||||| || |||||||| |
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| T |
7837058 |
aaagttttgtgccaaagatgtatttgccctcccttcaagtgatttcatttaatttctgcaaaaaatttgaacacttcccacatgtaatacaaaagatgga |
7836959 |
T |
|
| Q |
201 |
taagccattaaagattcacatgat |
224 |
Q |
| |
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| ||||||||||||||||||||| |
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| T |
7836958 |
caggccattaaagattcacatgat |
7836935 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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