View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13044_low_46 (Length: 235)
Name: NF13044_low_46
Description: NF13044
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13044_low_46 |
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Alignment Details
Target: chr4 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 56177423 - 56177203
Alignment:
| Q |
1 |
aaatcaaagaacaaggtggcaataacaggtaagttctagaaacaaaggtatataacaaataagttagatttgttaaaaaggaaaagagaaagacaaggaa |
100 |
Q |
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| T |
56177423 |
aaatcaaagaacaaggtggcaataacaagtaagttctagaaacaaagatatataa-aaataagttagatttgttaaaaaggaaaagagaaagacaaggaa |
56177325 |
T |
|
| Q |
101 |
cttgataaattgacttactcacattaaaataatcaccaagaggaactccatggaagttcataacctcttctacaagccaaccatttccatccaaaatagt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
56177324 |
cttgataaattgacttactcacattaaaataatcaccaagaggaactccatggaagttcataacctcttctacaagccaaccatttccatccaaaatagt |
56177225 |
T |
|
| Q |
201 |
tttttgttgagtacttgttact |
222 |
Q |
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|||||||||||||||||||||| |
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| T |
56177224 |
tttttgttgagtacttgttact |
56177203 |
T |
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Back To:
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Target: chr2 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 117 - 196
Target Start/End: Complemental strand, 9999627 - 9999548
Alignment:
| Q |
117 |
actcacattaaaataatcaccaagaggaactccatggaagttcataacctcttctacaagccaaccatttccatccaaaa |
196 |
Q |
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||||||||| |||||||||||||||||||| ||||| | || | ||||||||| |||| |||||| ||||||||||||| |
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| T |
9999627 |
actcacattgaaataatcaccaagaggaacaccatgaagatttaaaacctcttcaacaacccaaccctttccatccaaaa |
9999548 |
T |
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