View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13044_low_5 (Length: 681)
Name: NF13044_low_5
Description: NF13044
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13044_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 631; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 631; E-Value: 0
Query Start/End: Original strand, 19 - 665
Target Start/End: Original strand, 22534542 - 22535188
Alignment:
| Q |
19 |
tatgtcccctcttaacaatactaatagaataagaagtatagctagcctgtgtccaattaaaatcttctcaataggccatatgtcttttctacttctagat |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22534542 |
tatgtcccctcttaacaatactaatagaataagaagtatagctagcctgtgtccaattaaaatcttctcaataggccatatgtcttttctacttctagat |
22534641 |
T |
|
| Q |
119 |
caataaattacatgtccaaggtaagatgcatatatgaacataaatttaaccatgataatgcagaaatatagtagagtaaacaaggcaatctagatcaata |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22534642 |
caataaattacatgtccaaggtaagatgcatatatgaacataaatttaaccatgataatgcagaaatatagtagagtaaacaaggcaatctagatcaata |
22534741 |
T |
|
| Q |
219 |
aaatatgctaccaatttgtattaaatcaaaacaataacttatcaagtgattatagcagattgttaatgttgtattacagacaacggaaacaaactaaagc |
318 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||| |
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| T |
22534742 |
aaatatgctaccaatttgtattaaatcaaaacaataacttatcaagtgattatagcagattgttaatgttgtattacagacaacggacaaaaactaaagc |
22534841 |
T |
|
| Q |
319 |
gccagcactcaacaatacacacacaaagcagaacaatattcaaatgaaaagagcatttgacaatcaataagttatgagcatctgacaagatataaataac |
418 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22534842 |
gccaacactcaacaatacacacacaaagcagaacaatattcaaatgaaaagagcatttgacaatcaataagttatgagcatctgacaagatataaataac |
22534941 |
T |
|
| Q |
419 |
ttgatagcatcgtttataaaacttatggccgaatgctttgagataagactgcaaaaacaaattaattattcgtttctccaaaaggaaaaggaagaaggtt |
518 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22534942 |
ttgatagcatcgtttataaaacttatggccgaatgctttgagataagactgcaaaaacaaattaattattcgtttctccaaaaggaaaaggaagaaggtt |
22535041 |
T |
|
| Q |
519 |
ttccttatacattacaatcttctggcaagccgactctgcctcaactccaatgtcttcactagtttgggtacttaaatcaatcagggctagctccatattt |
618 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22535042 |
ttccttatacattacaatcttctggcaagccaactctgcctcaactccaatgtcttcactagtttgggtacttaaatcaatcagggctagctccatattt |
22535141 |
T |
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| Q |
619 |
ctttttatgtacaatataccactctttattccaatcccaatagcaca |
665 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22535142 |
ctttttatgtacaatataccactctttattccaatcccaatagcaca |
22535188 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 181; Significance: 2e-97; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 181; E-Value: 2e-97
Query Start/End: Original strand, 385 - 664
Target Start/End: Complemental strand, 37831187 - 37830907
Alignment:
| Q |
385 |
ataagttatgagcatctgacaagatataaataacttgatagcatcgtttataaaacttatggccgaatgctttgagataagactgcaaaaacaaattaat |
484 |
Q |
| |
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|||| ||||| ||| |||||||||||||||||||||||| |||||||| ||||| || ||||| || |||||| |||||||||||||||||||||||||| |
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| T |
37831187 |
ataaattatgggcaactgacaagatataaataacttgatggcatcgttcataaacctcatggctgagtgctttcagataagactgcaaaaacaaattaat |
37831088 |
T |
|
| Q |
485 |
tattcgtttctccaaaaggaaaaggaagaaggttttccttatacattacaatcttctggcaagccgactctgcctcaactccaatg-tcttcactagttt |
583 |
Q |
| |
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||||| || ||||||||||||||||||||||||||| |||| | |||||||||||| |||| |||||||| |||||||||||||| ||||||||||||| |
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| T |
37831087 |
tattcattcctccaaaaggaaaaggaagaaggtttttcttagaaattacaatcttcatgcaaaccgactctacctcaactccaatgttcttcactagttt |
37830988 |
T |
|
| Q |
584 |
gggtacttaaatcaatcagggctagctccatatttctttttatgtacaatataccactctttattccaatcccaatagcac |
664 |
Q |
| |
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||||||||||||||||||||||||||||||||||| ||||||||| |||||| ||||||||||||||||||||||||||| |
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| T |
37830987 |
gggtacttaaatcaatcagggctagctccatattttcttttatgtagaatatagcactctttattccaatcccaatagcac |
37830907 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 165; E-Value: 7e-88
Query Start/End: Original strand, 400 - 664
Target Start/End: Original strand, 37832128 - 37832389
Alignment:
| Q |
400 |
ctgacaagatataaataacttgatagcatcgtttataaaacttatggccgaatgctttgagataagactgcaaaaacaaattaattattcgtttctccaa |
499 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||| | ||||| |||||||||||| ||||||||||||||||||||||| ||| || |||||| |
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| T |
37832128 |
ctgacaagatataaataacttgatagcatcgttcataaacgtcatggctgaatgctttgag-taagactgcaaaaacaaattaatcattgattcctccaa |
37832226 |
T |
|
| Q |
500 |
aaggaaaaggaagaaggttttccttatacattacaatcttctggcaagccgactctgcctcaactccaatgtcttcactagtttgggtacttaaatcaat |
599 |
Q |
| |
|
||||||||||||||||||||| ||||| ||||||||||||| |||| ||||||||||||||||||||||||||||||| ||||||||||| ||||||| |
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| T |
37832227 |
aaggaaaaggaagaaggttttg-ttataaattacaatcttcttgcaaaccgactctgcctcaactccaatgtcttcactggtttgggtactaaaatcaac |
37832325 |
T |
|
| Q |
600 |
cagggctagctccatatttctttttatgtacaatataccactctttattccaatcccaatagcac |
664 |
Q |
| |
|
|||||||||||||||||||| ||||||||| |||||| ||| ||||||||||||||||||||||| |
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| T |
37832326 |
cagggctagctccatatttc-ttttatgtaaaatatatcaccctttattccaatcccaatagcac |
37832389 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 139 - 225
Target Start/End: Original strand, 37831397 - 37831483
Alignment:
| Q |
139 |
gtaagatgcatatatgaacataaatttaaccatgataatgcagaaatatagtagagtaaacaaggcaatctagatcaataaaatatg |
225 |
Q |
| |
|
||||||||||| ||||||||||||||||||||| |||||||| ||||| |||||||||||||||| |||||||||||| ||| |||| |
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| T |
37831397 |
gtaagatgcatgtatgaacataaatttaaccattataatgcacaaatagagtagagtaaacaaggaaatctagatcaaaaaattatg |
37831483 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 139 - 220
Target Start/End: Complemental strand, 16781157 - 16781076
Alignment:
| Q |
139 |
gtaagatgcatatatgaacataaatttaaccatgataatgcagaaatatagtagagtaaacaaggcaatctagatcaataaa |
220 |
Q |
| |
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||||||||||| ||| |||||| ||| |||||||| |||||||||||| ||||||||||||||| |||| ||||||| |||| |
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| T |
16781157 |
gtaagatgcatgtataaacatagattaaaccatgagaatgcagaaatagagtagagtaaacaagacaatatagatcagtaaa |
16781076 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 139 - 220
Target Start/End: Original strand, 18138612 - 18138693
Alignment:
| Q |
139 |
gtaagatgcatatatgaacataaatttaaccatgataatgcagaaatatagtagagtaaacaaggcaatctagatcaataaa |
220 |
Q |
| |
|
||||||||||| ||||| |||||| || | |||| ||| || ||||| || ||||||||||| |||||||||||||||||| |
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|
| T |
18138612 |
gtaagatgcatgtatgatcataaacttcaatatgagaatacataaatagagcagagtaaacaaagcaatctagatcaataaa |
18138693 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 74 - 124
Target Start/End: Original strand, 37831345 - 37831395
Alignment:
| Q |
74 |
attaaaatcttctcaataggccatatgtcttttctacttctagatcaataa |
124 |
Q |
| |
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|||||||| || ||| ||||||||||| ||||||||||| ||||||||||| |
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| T |
37831345 |
attaaaatattttcagtaggccatatgccttttctacttgtagatcaataa |
37831395 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 324 - 357
Target Start/End: Original strand, 37832019 - 37832052
Alignment:
| Q |
324 |
cactcaacaatacacacacaaagcagaacaatat |
357 |
Q |
| |
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|||| ||||||||||||||||||||||||||||| |
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|
| T |
37832019 |
cacttaacaatacacacacaaagcagaacaatat |
37832052 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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