View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13044_low_50 (Length: 206)
Name: NF13044_low_50
Description: NF13044
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13044_low_50 |
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Alignment Details
Target: chr4 (Bit Score: 172; Significance: 1e-92; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 19 - 190
Target Start/End: Complemental strand, 7754453 - 7754282
Alignment:
| Q |
19 |
attatgctaaaaggatactagacgcttgtgatttctacccagttatacgagcgtttaatagtaaatgtctcataactgttgatgaaaatggtttgctaca |
118 |
Q |
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| T |
7754453 |
attatgctaaaaggatactagacgcttgtgatttctacccagttatacgagcgtttaatagtaaatgtctcataactgttgatgaaaatggtttgctaca |
7754354 |
T |
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| Q |
119 |
aatgcatgatctaatacaagacatgggtagagagattgtacggaaagaatcaacatcaaaccctggtgaacg |
190 |
Q |
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| T |
7754353 |
aatgcatgatctaatacaagacatgggtagagagattgtacggaaagaatcaacatcaaaccctggtgaacg |
7754282 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 19 - 190
Target Start/End: Complemental strand, 7761552 - 7761381
Alignment:
| Q |
19 |
attatgctaaaaggatactagacgcttgtgatttctacccagttatacgagcgtttaatagtaaatgtctcataactgttgatgaaaatggtttgctaca |
118 |
Q |
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| T |
7761552 |
attatgttaaaaggatacaagaagcttgtgattttttcccagttatacgagtatttgttagtaaatgtctcttaactgttgatgaaaatggttgtataga |
7761453 |
T |
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| Q |
119 |
aatgcatgatctaatacaagacatgggtagagagattgtacggaaagaatcaacatcaaaccctggtgaacg |
190 |
Q |
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| T |
7761452 |
aatgcatgatttaatacaagacatgggtagagagattgttcggaaggagtcgacatcaaaccctggtgaacg |
7761381 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 19 - 190
Target Start/End: Complemental strand, 7837969 - 7837798
Alignment:
| Q |
19 |
attatgctaaaaggatactagacgcttgtgatttctacccagttatacgagcgtttaatagtaaatgtctcataactgttgatgaaaatggtttgctaca |
118 |
Q |
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| T |
7837969 |
attatgttaaaaggatactcgatgcttgtggtttctacccagttatacgagtctttgttagcaaatgtctgttaattgttgatgaaaatggttgtttaga |
7837870 |
T |
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| Q |
119 |
aatgcatgatctaatacaagacatgggtagagagattgtacggaaagaatcaacatcaaaccctggtgaacg |
190 |
Q |
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| T |
7837869 |
gatgcatgatctaatacaagacatgggtagagagattattcggaaagaatcgacttcaaaccctggtgaacg |
7837798 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 120 - 157
Target Start/End: Original strand, 7828501 - 7828538
Alignment:
| Q |
120 |
atgcatgatctaatacaagacatgggtagagagattgt |
157 |
Q |
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| T |
7828501 |
atgcatgatctaatacaagatatgggtagagaggttgt |
7828538 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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