View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13044_low_6 (Length: 616)
Name: NF13044_low_6
Description: NF13044
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13044_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 573; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 573; E-Value: 0
Query Start/End: Original strand, 9 - 589
Target Start/End: Complemental strand, 46126002 - 46125422
Alignment:
| Q |
9 |
gaagaatatcacgataaaggaaattaaaatgcaatggtaaaacttaccgaatatgctcaagagttccgtgagtgacgttagaaataacccacacagcctc |
108 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46126002 |
gaagaaaatcacgataaaggaaattaaaatgcaatggtaaaacttaccgaatatgctcaagagttccgtgagtgacgttagaaataacccacacagcctc |
46125903 |
T |
|
| Q |
109 |
cttcctgatgtcgaagtcggcctttgtgagacggacaagagaactaataagatcggcgtcaatgacatcctgcagaaaagatcataataatattagttat |
208 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46125902 |
cttcctgatgtcgaagtcagcctttgtgagacggacaagagaactaataagatcggcgtcaatgacatcctgcagaaaagatcataataatattagttat |
46125803 |
T |
|
| Q |
209 |
gacaatattctatgtttaaaaggtttagctagtctttccagattagcatatctaactctgttggatgaggtaattggttagcataactccagattttttc |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46125802 |
gacaatattctatgtttaaaaggtttagctagtctttccagattagcatatctaactctgttggatgaggtaattggttagcataactccagattttttc |
46125703 |
T |
|
| Q |
309 |
aagcaaatccagttttaattttaaaaatgtgcaaacagcctaatgtctagcctctacccttaattctttattcaataaatgtagactaattcataattat |
408 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46125702 |
aagcaaatccagttttaattttaaaaatgtgcaaacagcctaatgtctagcctctacccttaattctttattcaataaatgtagactaattcataattat |
46125603 |
T |
|
| Q |
409 |
ttgtaaagcgtcctttgttgttgcgagtatgtgtgtatatacacaggcttatccaactaaccccccatgtataactgtatagtattcatcttctcagttc |
508 |
Q |
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| T |
46125602 |
ttgtaaagcgtcctttgttgttgcgagtatgtgtgtatatacacaggcttatccaactaaccccccatgtataactgtatagtattcatcttctcagttc |
46125503 |
T |
|
| Q |
509 |
tctctacatctcagttggcattaaaaatgaatatgattcacattcatccagcttaaatcttagacattactgaagaacata |
589 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46125502 |
tctctacatctcagttggcattaaaaatgaatatgattcacattcatccagcttaaatcttagacattactgaagaacata |
46125422 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 230; E-Value: 1e-126
Query Start/End: Original strand, 16 - 385
Target Start/End: Complemental strand, 46704786 - 46704413
Alignment:
| Q |
16 |
atcacgataaaggaaattaaaatgcaatggtaaaacttaccgaatatgctcaagagttccgtgagtgacgttagaaataacccacacagcctccttcctg |
115 |
Q |
| |
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|||| ||||||||||||||||||||||||||| ||||||||||||||||||| ||||||| | |||||| ||||||||| |||||| |||||||||||| |
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| T |
46704786 |
atcatgataaaggaaattaaaatgcaatggtagaacttaccgaatatgctcatgagttccctcagtgacattagaaatagcccacagagcctccttccta |
46704687 |
T |
|
| Q |
116 |
atgtcgaagtcggcctttgtgagacggacaagagaactaataagatcggcgtcaatgacatcctgcagaaaagatcataataatattagtta----tgac |
211 |
Q |
| |
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||||| ||||| ||||||||||||||||||||||||||||||||||| || ||||||||||||||| |||||||||||||||||||||||| |||| |
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| T |
46704686 |
atgtcaaagtcagcctttgtgagacggacaagagaactaataagatcagcatcaatgacatcctgcgcaaaagatcataataatattagttagttgtgac |
46704587 |
T |
|
| Q |
212 |
aatattctatgtttaaaaggtttagctagtctttccagattagcatatctaactctgttggatgaggtaattggttagcataactccagattttttcaag |
311 |
Q |
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|||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||| | ||| |||||||||||||||||| || ||| |
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| T |
46704586 |
aatattctatgtttaaaaggtttagccagtcttaccagattagcatatctaactctgttggatgagatgattaagtagcataactccagatttgtt-aag |
46704488 |
T |
|
| Q |
312 |
caaatcca-gttttaattttaaaaatgtgcaaacagcctaatgtctagcctctacccttaattctttattcaata |
385 |
Q |
| |
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|||||||| ||||||||||| |||||||||||||||||||||| |||||||||| |||||||| |||||||||| |
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| T |
46704487 |
caaatccattttttaattttataaatgtgcaaacagcctaatgtttagcctctacacttaattccttattcaata |
46704413 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 145; E-Value: 5e-76
Query Start/End: Original strand, 16 - 244
Target Start/End: Complemental strand, 46131652 - 46131425
Alignment:
| Q |
16 |
atcacgataaaggaaattaaaatgcaatggtaaaacttaccgaatatgctcaagagttccgtgagtgacgttagaaataacccacacagcctccttcctg |
115 |
Q |
| |
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|||| ||||||||||||||||||||||||||| ||||||||||||||||||| ||||||| | |||||| ||| ||||| ||||||| ||||||||||| |
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| T |
46131652 |
atcatgataaaggaaattaaaatgcaatggtagaacttaccgaatatgctcatgagttccctcagtgacattacaaatagcccacacggcctccttccta |
46131553 |
T |
|
| Q |
116 |
atgtcgaagtcggcctttgtgagacggacaagagaactaataagatcggcgtcaatgacatcctgcagaaaagatcataataatattagttatgacaata |
215 |
Q |
| |
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|| |||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||| |||||||||||||| || ||||| |
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| T |
46131552 |
atctcgaagtcagcctttgtgagacggacaagagaactaataagatcggcatcaatgacatcctgcagaaatgatcctaataatattagttgtgccaata |
46131453 |
T |
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| Q |
216 |
ttctatgtttaaaaggtttagctagtctt |
244 |
Q |
| |
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|| ||||||||| ||||||||| |||||| |
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| T |
46131452 |
tt-tatgtttaagaggtttagccagtctt |
46131425 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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