View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13044_low_7 (Length: 591)

Name: NF13044_low_7
Description: NF13044
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13044_low_7
NF13044_low_7
[»] chr7 (6 HSPs)
chr7 (10-91)||(31167001-31167082)
chr7 (17-81)||(21972117-21972181)
chr7 (10-73)||(21971546-21971608)
chr7 (15-81)||(28750972-28751038)
chr7 (15-81)||(38916438-38916504)
chr7 (10-67)||(27595999-27596056)
[»] chr2 (5 HSPs)
chr2 (10-91)||(39865345-39865426)
chr2 (10-81)||(29770770-29770841)
chr2 (10-81)||(4329602-4329673)
chr2 (17-81)||(4330161-4330225)
chr2 (19-55)||(29771326-29771362)
[»] chr8 (3 HSPs)
chr8 (10-84)||(26759204-26759278)
chr8 (17-91)||(186668-186742)
chr8 (10-76)||(146644-146710)
[»] chr5 (2 HSPs)
chr5 (10-81)||(39121881-39121952)
chr5 (17-77)||(14393983-14394043)
[»] chr3 (2 HSPs)
chr3 (10-81)||(23566936-23567007)
chr3 (10-81)||(39737771-39737842)
[»] chr4 (7 HSPs)
chr4 (10-81)||(38147395-38147466)
chr4 (10-77)||(28103806-28103873)
chr4 (15-80)||(12639773-12639838)
chr4 (10-78)||(917683-917751)
chr4 (17-54)||(919140-919177)
chr4 (17-57)||(28104385-28104425)
chr4 (15-91)||(43012748-43012824)
[»] chr6 (1 HSPs)
chr6 (11-78)||(604984-605051)


Alignment Details
Target: chr7 (Bit Score: 66; Significance: 7e-29; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 10 - 91
Target Start/End: Original strand, 31167001 - 31167082
Alignment:
Q  10 attatactttaattaagatgaattaagtgggattcatttatttaattactatttattgttccttatccagtgtcctgggggc 91  Q
    |||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||| || ||||||    
T  31167001 attatactttaattgagatgaattaagtgagattcatttatttaattactatttattgttccttatccagtgccccgggggc 31167082  T

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Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 17 - 81
Target Start/End: Original strand, 21972117 - 21972181
Alignment:
Q  17 tttaattaagatgaattaagtgggattcatttatttaattactatttattgttccttatccagtg 81  Q
    |||||||||||||||||||||| ||||||||||||||||   | || ||||||||||||||||||    
T  21972117 tttaattaagatgaattaagtgagattcatttatttaatgcattttaattgttccttatccagtg 21972181  T

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Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 10 - 73
Target Start/End: Complemental strand, 21971608 - 21971546
Alignment:
Q  10 attatactttaattaagatgaattaagtgggattcatttatttaattactatttattgttcctt 73  Q
    |||||||||||||| |||||| ||||||| ||| |||||||||||||| |||||||||||||||    
T  21971608 attatactttaattgagatgagttaagtgagat-catttatttaattattatttattgttcctt 21971546  T

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Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 15 - 81
Target Start/End: Original strand, 28750972 - 28751038
Alignment:
Q  15 actttaattaagatgaattaagtgggattcatttatttaattactatttattgttccttatccagtg 81  Q
    |||||||||||| | || |||||| ||| |||||||||| |  ||||||||||||||||||||||||    
T  28750972 actttaattaaggtaaactaagtgagatccatttatttattgcctatttattgttccttatccagtg 28751038  T

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Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 15 - 81
Target Start/End: Original strand, 38916438 - 38916504
Alignment:
Q  15 actttaattaagatgaattaagtgggattcatttatttaattactatttattgttccttatccagtg 81  Q
    |||||||||||| | ||| ||||| ||| |||||||||| |  ||||||||||||| ||||||||||    
T  38916438 actttaattaaggtaaatcaagtgagatccatttatttattgtctatttattgttctttatccagtg 38916504  T

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Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 10 - 67
Target Start/End: Complemental strand, 27596056 - 27595999
Alignment:
Q  10 attatactttaattaagatgaattaagtgggattcatttatttaattactatttattg 67  Q
    |||| ||||||||| |||||||||||||| ||| |||||||||| |  ||||||||||    
T  27596056 attacactttaattgagatgaattaagtgagatccatttatttattggctatttattg 27595999  T

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Target: chr2 (Bit Score: 66; Significance: 7e-29; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 10 - 91
Target Start/End: Original strand, 39865345 - 39865426
Alignment:
Q  10 attatactttaattaagatgaattaagtgggattcatttatttaattactatttattgttccttatccagtgtcctgggggc 91  Q
    |||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||| || ||||||    
T  39865345 attatactttaattgagatgaattaagtgagattcatttatttaattactatttattgttccttatccagtgccccgggggc 39865426  T

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Target: chr2; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 10 - 81
Target Start/End: Complemental strand, 29770841 - 29770770
Alignment:
Q  10 attatactttaattaagatgaattaagtgggattcatttatttaattactatttattgttccttatccagtg 81  Q
    |||||||||||| | |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  29770841 attatactttaactgagatgaattaagtgagattcatttatttaattactatttattgttccttatccagtg 29770770  T

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Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 10 - 81
Target Start/End: Complemental strand, 4329673 - 4329602
Alignment:
Q  10 attatactttaattaagatgaattaagtgggattcatttatttaattactatttattgttccttatccagtg 81  Q
    |||| ||||||||| |||||||||||||| |||  ||||||||| | |||||||| ||||||||||||||||    
T  4329673 attacactttaattgagatgaattaagtgagatctatttatttattaactatttactgttccttatccagtg 4329602  T

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Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 17 - 81
Target Start/End: Original strand, 4330161 - 4330225
Alignment:
Q  17 tttaattaagatgaattaagtgggattcatttatttaattactatttattgttccttatccagtg 81  Q
    ||||||| |||||||||||||| ||| ||||||||||||   |||| ||||||||||||||||||    
T  4330161 tttaattgagatgaattaagtgagatccatttatttaatgcatattaattgttccttatccagtg 4330225  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 19 - 55
Target Start/End: Original strand, 29771326 - 29771362
Alignment:
Q  19 taattaagatgaattaagtgggattcatttatttaat 55  Q
    ||||| |||||||||||||| ||||||||||||||||    
T  29771326 taattgagatgaattaagtgagattcatttatttaat 29771362  T

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Target: chr8 (Bit Score: 63; Significance: 4e-27; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 10 - 84
Target Start/End: Complemental strand, 26759278 - 26759204
Alignment:
Q  10 attatactttaattaagatgaattaagtgggattcatttatttaattactatttattgttccttatccagtgtcc 84  Q
    |||||||||||||| |||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||    
T  26759278 attatactttaattgagatgaattaagtgagatccatttatttaattactatttattgttccttatccagtgtcc 26759204  T

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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 17 - 91
Target Start/End: Complemental strand, 186742 - 186668
Alignment:
Q  17 tttaattaagatgaattaagtgggattcatttatttaattactatttattgttccttatccagtgtcctgggggc 91  Q
    |||||||||||| ||| ||||| ||| |||||||||| |  ||||||||||||||||||||  ||||| ||||||    
T  186742 tttaattaagataaatcaagtgagatccatttatttattagctatttattgttccttatccgatgtcccgggggc 186668  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 10 - 76
Target Start/End: Complemental strand, 146710 - 146644
Alignment:
Q  10 attatactttaattaagatgaattaagtgggattcatttatttaattactatttattgttccttatc 76  Q
    |||| ||||||||| |||| ||| ||||| ||| ||||||||||||  ||||||||||||| |||||    
T  146710 attacactttaattgagattaataaagtgagatccatttatttaatggctatttattgttcattatc 146644  T

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Target: chr5 (Bit Score: 60; Significance: 3e-25; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 10 - 81
Target Start/End: Original strand, 39121881 - 39121952
Alignment:
Q  10 attatactttaattaagatgaattaagtgggattcatttatttaattactatttattgttccttatccagtg 81  Q
    |||||||||||||| |||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  39121881 attatactttaattgagataaattaagtgagattcatttatttaattactatttattgttccttatccagtg 39121952  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 17 - 77
Target Start/End: Complemental strand, 14394043 - 14393983
Alignment:
Q  17 tttaattaagatgaattaagtgggattcatttatttaattactatttattgttccttatcc 77  Q
    |||||||||||| ||| ||||| ||| |||||||||| |   |||||||||||||||||||    
T  14394043 tttaattaagataaatcaagtgagatccatttatttattgcttatttattgttccttatcc 14393983  T

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Target: chr3 (Bit Score: 60; Significance: 3e-25; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 10 - 81
Target Start/End: Original strand, 23566936 - 23567007
Alignment:
Q  10 attatactttaattaagatgaattaagtgggattcatttatttaattactatttattgttccttatccagtg 81  Q
    |||||||||||||| ||||||||||||||  |||||||||||||||||||||||||||||||||||||||||    
T  23566936 attatactttaattgagatgaattaagtgatattcatttatttaattactatttattgttccttatccagtg 23567007  T

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Target: chr3; HSP #2
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 10 - 81
Target Start/End: Original strand, 39737771 - 39737842
Alignment:
Q  10 attatactttaattaagatgaattaagtgggattcatttatttaattactatttattgttccttatccagtg 81  Q
    |||||| ||||||| ||||||||||| |  |||  |||||||||||||||||||||||||||||||||||||    
T  39737771 attatattttaattgagatgaattaaataagatctatttatttaattactatttattgttccttatccagtg 39737842  T

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Target: chr4 (Bit Score: 44; Significance: 9e-16; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 10 - 81
Target Start/End: Complemental strand, 38147466 - 38147395
Alignment:
Q  10 attatactttaattaagatgaattaagtgggattcatttatttaattactatttattgttccttatccagtg 81  Q
    |||| ||||||||| |||||||||||||| ||| |||||||||| | |||||||| ||||||||||||||||    
T  38147466 attacactttaattgagatgaattaagtgagatccatttatttattgactatttactgttccttatccagtg 38147395  T

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Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 10 - 77
Target Start/End: Complemental strand, 28103873 - 28103806
Alignment:
Q  10 attatactttaattaagatgaattaagtgggattcatttatttaattactatttattgttccttatcc 77  Q
    |||| ||| ||||| |||||||||||||| ||| |||||||||||| | |||||||||||||||||||    
T  28103873 attacactctaattgagatgaattaagtgagatccatttatttaatgattatttattgttccttatcc 28103806  T

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Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 15 - 80
Target Start/End: Original strand, 12639773 - 12639838
Alignment:
Q  15 actttaattaagatgaattaagtgggattcatttatttaattactatttattgttccttatccagt 80  Q
    ||||||||| || ||||||||||| ||| |||||||||| |  |||||||||||||||||||||||    
T  12639773 actttaattgaggtgaattaagtgagatccatttatttattgcctatttattgttccttatccagt 12639838  T

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Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 10 - 78
Target Start/End: Complemental strand, 917751 - 917683
Alignment:
Q  10 attatactttaattaagatgaattaagtgggattcatttatttaattactatttattgttccttatcca 78  Q
    |||| ||||||||| ||||||||||| |  |||||||||||||| | |||||||||||||| |||||||    
T  917751 attacactttaattgagatgaattaacttagattcatttatttattgactatttattgttctttatcca 917683  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 17 - 54
Target Start/End: Original strand, 919140 - 919177
Alignment:
Q  17 tttaattaagatgaattaagtgggattcatttatttaa 54  Q
    ||||||| |||||||||||||| |||||||||||||||    
T  919140 tttaattgagatgaattaagtgagattcatttatttaa 919177  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 17 - 57
Target Start/End: Original strand, 28104385 - 28104425
Alignment:
Q  17 tttaattaagatgaattaagtgggattcatttatttaatta 57  Q
    ||||||| |||||||||||||| ||| ||||||||||||||    
T  28104385 tttaattgagatgaattaagtgagatccatttatttaatta 28104425  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 15 - 91
Target Start/End: Complemental strand, 43012824 - 43012748
Alignment:
Q  15 actttaattaagatgaattaagtgggattcatttatttaattactatttattgttccttatccagtgtcctgggggc 91  Q
    |||||||||||| | ||  || || ||| |||||||||| |  |||||||||||||||||||||||| || ||||||    
T  43012824 actttaattaaggtaaaccaaatgagatccatttatttattgtctatttattgttccttatccagtgccccgggggc 43012748  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 11 - 78
Target Start/End: Complemental strand, 605051 - 604984
Alignment:
Q  11 ttatactttaattaagatgaattaagtgggattcatttatttaattactatttattgttccttatcca 78  Q
    |||||||||||||||| | ||| ||||| ||| |||||||||| |  |||||||||||||||||||||    
T  605051 ttatactttaattaaggtaaatcaagtgagatccatttatttattgcctatttattgttccttatcca 604984  T

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