View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13045_high_3 (Length: 598)
Name: NF13045_high_3
Description: NF13045
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13045_high_3 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 526; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 526; E-Value: 0
Query Start/End: Original strand, 11 - 560
Target Start/End: Original strand, 44262020 - 44262569
Alignment:
| Q |
11 |
cagagaaagcaatattgaaaagtatcaatgttgtgagatttccttggctgccaagagtttctttaatctctccagagtaaattggatgttccatggctca |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44262020 |
cagagaaagcaatattgaaaagtatcaatgttgtgagatttccttggctgccaagagtttctttaatctctccagagtaaattggatgttccatggctca |
44262119 |
T |
|
| Q |
111 |
agaacatctagtcgaggcgtctataaggaagtggaacttccaagctcctcgggatggatgcatttaaggttgtaagtatccttgaccttccaatagtgaa |
210 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
44262120 |
agaacatctagtcgaggcgtctataaggaagtggaacttccaagctccttgggatggatgcatttaaggttgtaagtatccctgaccttccaatagtgaa |
44262219 |
T |
|
| Q |
211 |
attattgcttatctaaaaaatgttcagtgtggtgagattttccatggattttgacaatggtgatgaaaaagtgttgcaacataagctaagagaggttaga |
310 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
44262220 |
attattgcttatctaaaaaatgttcagtgtggtgagattttccatggattttgacaatggtgatgaaaaagtgttgcaacagaagctaagagaggttaga |
44262319 |
T |
|
| Q |
311 |
ctttaaagtgtttctatatcattggatattgtaccacagagattcttgtgagagagatcaagcttctttacatttccatctgagttgcatttgatgctag |
410 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44262320 |
ctttaaagtgtttctatatcattggatattgaaccactgagattcttgtgagagagatcaagcttctttacatttccatctgagttgcatttgatgctag |
44262419 |
T |
|
| Q |
411 |
tccagttacaatgagctgaatcacttcctaatgccaattttcaatcatgaagattgaagagtgttgaaaggatcaacaagacctgcttttttatagaaag |
510 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44262420 |
tccagttacaatgagctgaatcacttcctaatgccaattttcaatcatgaagattgaagagtgttgaaaggatcaacaagacctgcttttttatagaaag |
44262519 |
T |
|
| Q |
511 |
caatgctgatacttaatcatttgatactctaatctcatatactgtgccaa |
560 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
44262520 |
caatgctgatacttcatcatttgatactctaatctcatatactgtgccaa |
44262569 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 559 - 598
Target Start/End: Original strand, 44262550 - 44262589
Alignment:
| Q |
559 |
aatctcatatactgtgccaagaatattggtttgttatgcc |
598 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44262550 |
aatctcatatactgtgccaagaatattggtttgttatgcc |
44262589 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 61; Significance: 7e-26; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 266 - 426
Target Start/End: Original strand, 39470300 - 39470460
Alignment:
| Q |
266 |
aatggtgatgaaaaagtgttgcaacataagctaagagaggttagactttaaagtgtttctatatcattggatattgtaccacagagattcttgtgagaga |
365 |
Q |
| |
|
|||||||||||||| | |||||||||||| ||||||| || ||| ||| |||| ||| ||||||| ||||| | |||||| ||||||||||||||||| |
|
|
| T |
39470300 |
aatggtgatgaaaatgcattgcaacataagttaagagaagtaagattttgaagtctttgtatatcaccggatactataccactgagattcttgtgagaga |
39470399 |
T |
|
| Q |
366 |
gatcaagcttctttacatttccatctgagttgcatttgatgctagtccagttacaatgagc |
426 |
Q |
| |
|
||||||| |||| ||| ||||| | |||||||||| ||| | ||||||||||||||||| |
|
|
| T |
39470400 |
gatcaaggttctccacagttccagccgagttgcattcgattccggtccagttacaatgagc |
39470460 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 471 - 534
Target Start/End: Original strand, 39470486 - 39470547
Alignment:
| Q |
471 |
gtgttgaaaggatcaacaagacctgcttttttatagaaagcaatgctgatacttaatcatttga |
534 |
Q |
| |
|
||||| |||||||||||||||||| | ||| | ||||||||| |||||||||| ||||||||| |
|
|
| T |
39470486 |
gtgttcaaaggatcaacaagacct--tctttcaaagaaagcaaagctgatacttcatcatttga |
39470547 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 350 - 427
Target Start/End: Complemental strand, 30087567 - 30087490
Alignment:
| Q |
350 |
agattcttgtgagagagatcaagcttctttacatttccatctgagttgcatttgatgctagtccagttacaatgagct |
427 |
Q |
| |
|
|||||| |||| ||||||| |||||||| |||| |||| |||||||||| | || | ||||||||||||||||||| |
|
|
| T |
30087567 |
agattcatgtgtgagagattaagcttctctacagctccagctgagttgcactggacaccagtccagttacaatgagct |
30087490 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University