View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13045_high_4 (Length: 392)
Name: NF13045_high_4
Description: NF13045
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13045_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 134; Significance: 1e-69; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 153 - 305
Target Start/End: Complemental strand, 1481074 - 1480921
Alignment:
| Q |
153 |
tggtccttttaatttggggtccatattagg-gctccctaaatgattcatctaaaaattatttctttctaatttgtttaaacttgttttccttatgctatc |
251 |
Q |
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| T |
1481074 |
tggtccttttaatttgaggtccatattaggagctccctaaatgattcatctaaaaattatttctttctaatttgtttaaacttgatttccttatgctatc |
1480975 |
T |
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| Q |
252 |
atatacatttaggtaccattattacaatatcaaaggatagagttaaaccatctt |
305 |
Q |
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| T |
1480974 |
atatacatttaggtaccattattacaatatcaaaggatagagttaaaccttctt |
1480921 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 258 - 374
Target Start/End: Complemental strand, 1496445 - 1496329
Alignment:
| Q |
258 |
atttaggtaccattattacaatatcaaaggatagagttaaaccatcttcaataccagacagttgaaaactaaccgagatacttgcaactcgtgttgtgct |
357 |
Q |
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| T |
1496445 |
atttaggtaccattatgacaatatcaaaggatagagtgaaaccatctccactacctgatagttggaaactgagggagatatttgctactggtgttgtcct |
1496346 |
T |
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| Q |
358 |
aggaagttacatggcac |
374 |
Q |
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| T |
1496345 |
aggaagttacatggcac |
1496329 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 256 - 372
Target Start/End: Original strand, 1463207 - 1463323
Alignment:
| Q |
256 |
acatttaggtaccattattacaatatcaaaggatagagttaaaccatcttcaataccagacagttgaaaactaaccgagatacttgcaactcgtgttgtg |
355 |
Q |
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| T |
1463207 |
acatgtaggtaccattatgacaatatcaaaggatagagttaaaccatctccactacctgatagctggaaactaaaggaaatatttgctactggtattgtg |
1463306 |
T |
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| Q |
356 |
ctaggaagttacatggc |
372 |
Q |
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| T |
1463307 |
cttggcagttacatggc |
1463323 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 91; Significance: 5e-44; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 6 - 154
Target Start/End: Complemental strand, 1549500 - 1549354
Alignment:
| Q |
6 |
aattgtaagatgaaacatggttttttcagatttgaaacaatgaagagannnnnnnnnnnnnnnttgagatagaaaagaataataaataaaactattttca |
105 |
Q |
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| T |
1549500 |
aattgcaagatgaaacatggttttttcagatttgaaacaatgaagagatgtgcgtgtgtgt--ttgagatagaaaagaataataaataaaacaattttca |
1549403 |
T |
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| Q |
106 |
atgaagaaaaaagaatagggtatggttttgttgagttagttatttgatg |
154 |
Q |
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| T |
1549402 |
atgaagaaaaaagaatagggtatggttttgttgagttagttatttgatg |
1549354 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 261 - 374
Target Start/End: Original strand, 50276748 - 50276861
Alignment:
| Q |
261 |
taggtaccattattacaatatcaaaggatagagttaaaccatcttcaataccagacagttgaaaactaaccgagatacttgcaactcgtgttgtgctagg |
360 |
Q |
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| T |
50276748 |
taggtaccattatgacaatatccaaggatagagtaaaaccatctccaatgccagacagttggaaactgagagagatatttgctactggtgttgtgctagg |
50276847 |
T |
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| Q |
361 |
aagttacatggcac |
374 |
Q |
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| T |
50276848 |
tagctacatggcac |
50276861 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 153 - 182
Target Start/End: Original strand, 36700984 - 36701013
Alignment:
| Q |
153 |
tggtccttttaatttggggtccatattagg |
182 |
Q |
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| T |
36700984 |
tggtccttttaatttggggtccatattagg |
36701013 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 251 - 374
Target Start/End: Original strand, 26790960 - 26791083
Alignment:
| Q |
251 |
catatacatttaggtaccattattacaatatcaaaggatagagttaaaccatcttcaataccagacagttgaaaactaaccgagatacttgcaactcgtg |
350 |
Q |
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| T |
26790960 |
catatgcatgtaggtaccattatgacaatatcaaaggatagagttaaaccatctccattgcctgatagttggaaacttaaggagatatttgctactggta |
26791059 |
T |
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| Q |
351 |
ttgtgctaggaagttacatggcac |
374 |
Q |
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| T |
26791060 |
ttgtgcttggcagttacatggcac |
26791083 |
T |
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