View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13045_low_1 (Length: 644)

Name: NF13045_low_1
Description: NF13045
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13045_low_1
NF13045_low_1
[»] chr4 (4 HSPs)
chr4 (16-644)||(35742650-35743278)
chr4 (325-494)||(11917215-11917384)
chr4 (563-640)||(19422313-19422388)
chr4 (589-643)||(4191658-4191712)
[»] chr2 (8 HSPs)
chr2 (314-494)||(3424019-3424199)
chr2 (573-644)||(10150660-10150729)
chr2 (590-642)||(43431542-43431594)
chr2 (589-644)||(42817472-42817527)
chr2 (611-644)||(10143113-10143146)
chr2 (592-644)||(9478221-9478273)
chr2 (592-644)||(28803602-28803654)
chr2 (596-644)||(38239647-38239695)
[»] chr6 (10 HSPs)
chr6 (589-644)||(5554861-5554916)
chr6 (573-644)||(27889939-27890008)
chr6 (593-644)||(2023725-2023776)
chr6 (589-644)||(32975897-32975952)
chr6 (589-644)||(33068657-33068712)
chr6 (611-644)||(24836295-24836328)
chr6 (573-644)||(5564225-5564294)
chr6 (592-644)||(8420293-8420345)
chr6 (612-644)||(31672012-31672044)
chr6 (599-643)||(33116534-33116578)
[»] chr5 (7 HSPs)
chr5 (573-642)||(40499773-40499840)
chr5 (573-643)||(36638651-36638719)
chr5 (564-644)||(29117026-29117104)
chr5 (592-644)||(35135758-35135810)
chr5 (589-644)||(26516217-26516272)
chr5 (592-642)||(38033890-38033940)
chr5 (592-644)||(20982231-20982283)
[»] chr8 (5 HSPs)
chr8 (592-644)||(40728514-40728566)
chr8 (594-644)||(29699178-29699228)
chr8 (605-642)||(9928191-9928228)
chr8 (598-638)||(10062229-10062269)
chr8 (592-644)||(14482124-14482176)
[»] chr7 (9 HSPs)
chr7 (593-644)||(6552366-6552417)
chr7 (591-644)||(44241781-44241834)
chr7 (592-644)||(25511549-25511601)
chr7 (611-644)||(1432063-1432096)
chr7 (593-642)||(2223071-2223120)
chr7 (596-644)||(24973870-24973918)
chr7 (592-644)||(24975826-24975878)
chr7 (573-644)||(35536012-35536081)
chr7 (592-644)||(49060462-49060514)
[»] chr1 (9 HSPs)
chr1 (593-644)||(49557064-49557115)
chr1 (592-644)||(16982032-16982084)
chr1 (573-644)||(33339516-33339585)
chr1 (576-642)||(4202227-4202291)
chr1 (589-644)||(15437882-15437937)
chr1 (611-644)||(4549807-4549840)
chr1 (611-644)||(4700162-4700195)
chr1 (596-644)||(43333625-43333673)
chr1 (612-644)||(49517012-49517044)
[»] scaffold0508 (1 HSPs)
scaffold0508 (592-644)||(9871-9923)
[»] chr3 (3 HSPs)
chr3 (589-644)||(16790184-16790239)
chr3 (611-644)||(36887463-36887496)
chr3 (592-644)||(41028947-41028999)
[»] scaffold0100 (1 HSPs)
scaffold0100 (594-644)||(42541-42591)
[»] scaffold0590 (1 HSPs)
scaffold0590 (595-644)||(1170-1219)
[»] scaffold0275 (1 HSPs)
scaffold0275 (595-644)||(2756-2805)


Alignment Details
Target: chr4 (Bit Score: 617; Significance: 0; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 617; E-Value: 0
Query Start/End: Original strand, 16 - 644
Target Start/End: Original strand, 35742650 - 35743278
Alignment:
Q  16 cattaggacacaaatataagtacatataaatgatgatgttggattaccttgctgaaataacgttcaaccttgtccagaagctgacccataggagccacta 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35742650 cattaggacacaaatataagtacatataaatgatgatgttggattaccttgctgaaataacgttcaaccttgtccagaagctgacccataggagccacta 35742749  T
Q  116 ccttccaattttgaagttcagtgaggattgaatcaagcttattgtacaatgatgccgccattctaatagcttccaacttctttgtagggaagccttcgaa 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  35742750 ccttccaattttgaagttcagtgaggattgaatcaagcttattgtacaatgatgctgccattctaatagcttccaacttctttgtagggaagccttcgaa 35742849  T
Q  216 tcgtgatagcacctatacagaaacagaattgtataaattagttggtgaatgaaacaataactagtggaaatataaacctaatggacatgagttttgctaa 315  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35742850 tcgcgatagcacctatacagaaacagaattgtataaattagttggtgaatgaaacaataactagtggaaatataaacctaatggacatgagttttgctaa 35742949  T
Q  316 cttacctgtgattcatcagttagattctcaagaatagattcaacatctttgtggaacttgctcaattcggtcatgtcctttgtcttaaaattagtaattc 415  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  35742950 cttacctgtgattcatcagttagattctcaagaatagattcaacatctttgtggaacttgctcaattcggtcatgtcctttgtcttgaaattagtaattc 35743049  T
Q  416 ttgatctcagttctatgatttgttttgtgtacttttgaacatcttcttctatttgtatgaagtaagaagatctaataaatgtgggaaaagaaaaacatta 515  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35743050 ttgatctcagttctatgatttgttttgtgtacttttgaacatcttcttctatttgtatgaagtaagaagatctaataaatgtgggaaaagaaaaacatta 35743149  T
Q  516 cgaaatgagacattggttctatgacttgcatatcaagttaacaaaatatgtttgtagaaacaacttaattaagagcgcttatcatatatgtgttgatgta 615  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35743150 cgaaatgagacattggttctatgacttgcatatcaagttaacaaaatatgtttgtagaaacaacttaattaagagcgcttatcatatatgtgttgatgta 35743249  T
Q  616 caagttatttctataacaaaagataaaat 644  Q
    |||||||||||||||||||||||||||||    
T  35743250 caagttatttctataacaaaagataaaat 35743278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 98; E-Value: 6e-48
Query Start/End: Original strand, 325 - 494
Target Start/End: Original strand, 11917215 - 11917384
Alignment:
Q  325 gattcatcagttagattctcaagaatagattcaacatctttgtggaacttgctcaattcggtcatgtcctttgtcttaaaattagtaattcttgatctca 424  Q
    |||||||||||||| |||||||||| ||||||||||||||||||||||||| ||||||| ||||| ||||||||||| ||||| |||||    |||||||    
T  11917215 gattcatcagttagtttctcaagaacagattcaacatctttgtggaacttgatcaattctgtcatttcctttgtcttgaaattggtaatggaagatctca 11917314  T
Q  425 gttctatgatttgttttgtgtacttttgaacatcttcttctatttgtatgaagtaagaagatctaataaa 494  Q
     ||||||||| ||||||||||||||||||||||||||||||||||||   |||||||| |||||| ||||    
T  11917315 attctatgatgtgttttgtgtacttttgaacatcttcttctatttgttgaaagtaagatgatctagtaaa 11917384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 563 - 640
Target Start/End: Original strand, 19422313 - 19422388
Alignment:
Q  563 atgtttgtagaaacaacttaattaagagcgcttatcatatatgtgttgatgtacaagttatttctataacaaaagata 640  Q
    ||||||| | ||||| ||||||||||  |||||||||||||  || | ||||| ||||||||||||||||||||||||    
T  19422313 atgtttggataaacagcttaattaag--cgcttatcatataaatgcttatgtataagttatttctataacaaaagata 19422388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 589 - 643
Target Start/End: Original strand, 4191658 - 4191712
Alignment:
Q  589 agcgcttatcatatatgtgttgatgtacaagttatttctataacaaaagataaaa 643  Q
    |||| |||||||||| ||| | ||||| ||| |||||||||||||||||||||||    
T  4191658 agcgtttatcatataagtgcttatgtataagctatttctataacaaaagataaaa 4191712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 93; Significance: 6e-45; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 93; E-Value: 6e-45
Query Start/End: Original strand, 314 - 494
Target Start/End: Complemental strand, 3424199 - 3424019
Alignment:
Q  314 aacttacctgtgattcatcagttagattctcaagaatagattcaacatctttgtggaacttgctcaattcggtcatgtcctttgtcttaaaattagtaat 413  Q
    |||| ||||| |||||||||||||| ||||||| || ||||||||| ||||||||||||||| ||||||| ||||| ||||||||||| ||||| |||||    
T  3424199 aactaacctgagattcatcagttagtttctcaaaaacagattcaacttctttgtggaacttgatcaattctgtcatttcctttgtcttgaaattggtaat 3424100  T
Q  414 tcttgatctcagttctatgatttgttttgtgtacttttgaacatcttcttctatttgtatgaagtaagaagatctaataaa 494  Q
        ||||||| ||||||||| ||||||||||||||||||||||||||||||||||||   |||||||| |||||| ||||    
T  3424099 agaagatctcaattctatgatgtgttttgtgtacttttgaacatcttcttctatttgttgaaagtaagatgatctagtaaa 3424019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 573 - 644
Target Start/End: Original strand, 10150660 - 10150729
Alignment:
Q  573 aaacaacttaattaagagcgcttatcatatatgtgttgatgtacaagttatttctataacaaaagataaaat 644  Q
    ||||||||||||||||  | ||||| ||||| ||||| ||||| ||||||||||||||| ||||||||||||    
T  10150660 aaacaacttaattaag--cacttattatataagtgtttatgtataagttatttctataataaaagataaaat 10150729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 590 - 642
Target Start/End: Complemental strand, 43431594 - 43431542
Alignment:
Q  590 gcgcttatcatatatgtgttgatgtacaagttatttctataacaaaagataaa 642  Q
    |||||||||||||| ||||| ||||| |||||||||| |||||||||||||||    
T  43431594 gcgcttatcatataagtgttaatgtataagttatttcaataacaaaagataaa 43431542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 589 - 644
Target Start/End: Complemental strand, 42817527 - 42817472
Alignment:
Q  589 agcgcttatcatatatgtgttgatgtacaagttatttctataacaaaagataaaat 644  Q
    |||| |||||||||| |||||||| || | |||||||||||| |||||||||||||    
T  42817527 agcgtttatcatataagtgttgatttatatgttatttctataccaaaagataaaat 42817472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 611 - 644
Target Start/End: Original strand, 10143113 - 10143146
Alignment:
Q  611 atgtacaagttatttctataacaaaagataaaat 644  Q
    ||||| ||||||||||||||||||||||||||||    
T  10143113 atgtataagttatttctataacaaaagataaaat 10143146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 592 - 644
Target Start/End: Original strand, 9478221 - 9478273
Alignment:
Q  592 gcttatcatatatgtgttgatgtacaagttatttctataacaaaagataaaat 644  Q
    |||||||||||| ||||| ||||| ||| |||||||||||||  |||||||||    
T  9478221 gcttatcatataagtgtttatgtataagctatttctataacagtagataaaat 9478273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 592 - 644
Target Start/End: Complemental strand, 28803654 - 28803602
Alignment:
Q  592 gcttatcatatatgtgttgatgtacaagttatttctataacaaaagataaaat 644  Q
    |||||||||||| ||| | || || |||||||||| |||||||||||||||||    
T  28803654 gcttatcatataagtgcttatatataagttatttcgataacaaaagataaaat 28803602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 596 - 644
Target Start/End: Complemental strand, 38239695 - 38239647
Alignment:
Q  596 atcatatatgtgttgatgtacaagttatttctataacaaaagataaaat 644  Q
    ||||| || ||||| ||||| ||| ||||||||||||||||||||||||    
T  38239695 atcatgtaagtgtttatgtataagctatttctataacaaaagataaaat 38239647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 589 - 644
Target Start/End: Complemental strand, 5554916 - 5554861
Alignment:
Q  589 agcgcttatcatatatgtgttgatgtacaagttatttctataacaaaagataaaat 644  Q
    ||||| ||||||||| ||||| ||||| ||||||||||||||||||||||||||||    
T  5554916 agcgcatatcatatacgtgtttatgtataagttatttctataacaaaagataaaat 5554861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 573 - 644
Target Start/End: Complemental strand, 27890008 - 27889939
Alignment:
Q  573 aaacaacttaattaagagcgcttatcatatatgtgttgatgtacaagttatttctataacaaaagataaaat 644  Q
    ||||||||||||||||  |  |||||||||  ||| | |||||||||||||||||||||||| |||||||||    
T  27890008 aaacaacttaattaag--catttatcatatgagtgcttatgtacaagttatttctataacaacagataaaat 27889939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 593 - 644
Target Start/End: Complemental strand, 2023776 - 2023725
Alignment:
Q  593 cttatcatatatgtgttgatgtacaagttatttctataacaaaagataaaat 644  Q
    ||||||||||| ||||| || || |||||||||||||| |||||||||||||    
T  2023776 cttatcatataagtgttcatatataagttatttctatagcaaaagataaaat 2023725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 589 - 644
Target Start/End: Original strand, 32975897 - 32975952
Alignment:
Q  589 agcgcttatcatatatgtgttgatgtacaagttatttctataacaaaagataaaat 644  Q
    ||||||| ||||||| ||||| ||||| ||||||||||| |||||||| |||||||    
T  32975897 agcgcttctcatataagtgtttatgtataagttatttctgtaacaaaatataaaat 32975952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 589 - 644
Target Start/End: Complemental strand, 33068712 - 33068657
Alignment:
Q  589 agcgcttatcatatatgtgttgatgtacaagttatttctataacaaaagataaaat 644  Q
    ||||||||||| |||  || | ||||| ||||||||||||||||||||||||||||    
T  33068712 agcgcttatcaaataaatgcttatgtataagttatttctataacaaaagataaaat 33068657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 611 - 644
Target Start/End: Complemental strand, 24836328 - 24836295
Alignment:
Q  611 atgtacaagttatttctataacaaaagataaaat 644  Q
    ||||| ||||||||||||||||||||||||||||    
T  24836328 atgtataagttatttctataacaaaagataaaat 24836295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 573 - 644
Target Start/End: Complemental strand, 5564294 - 5564225
Alignment:
Q  573 aaacaacttaattaagagcgcttatcatatatgtgttgatgtacaagttatttctataacaaaagataaaat 644  Q
    ||||||||||||||||  ||||||||| ||| ||  ||||||| ||| ||||| |||| |||||||||||||    
T  5564294 aaacaacttaattaag--cgcttatcacataagttctgatgtataagctatttatatagcaaaagataaaat 5564225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 592 - 644
Target Start/End: Complemental strand, 8420345 - 8420293
Alignment:
Q  592 gcttatcatatatgtgttgatgtacaagttatttctataacaaaagataaaat 644  Q
    |||||||||||| ||| | ||||||||||||||||| ||| ||| ||||||||    
T  8420345 gcttatcatataagtgcttatgtacaagttatttctttaataaatgataaaat 8420293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 612 - 644
Target Start/End: Original strand, 31672012 - 31672044
Alignment:
Q  612 tgtacaagttatttctataacaaaagataaaat 644  Q
    |||| ||||||||||||||||||||||||||||    
T  31672012 tgtataagttatttctataacaaaagataaaat 31672044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 599 - 643
Target Start/End: Original strand, 33116534 - 33116578
Alignment:
Q  599 atatatgtgttgatgtacaagttatttctataacaaaagataaaa 643  Q
    ||||| ||||| ||||| ||||||||||| |||||||||||||||    
T  33116534 atataagtgtttatgtataagttatttctttaacaaaagataaaa 33116578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.000000000001; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 573 - 642
Target Start/End: Complemental strand, 40499840 - 40499773
Alignment:
Q  573 aaacaacttaattaagagcgcttatcatatatgtgttgatgtacaagttatttctataacaaaagataaa 642  Q
    ||||||||||||||| |||  |||||||||| ||| | ||||||||||||||||||||||||| ||||||    
T  40499840 aaacaacttaattaaaagc--ttatcatataagtgcttatgtacaagttatttctataacaaatgataaa 40499773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 573 - 643
Target Start/End: Original strand, 36638651 - 36638719
Alignment:
Q  573 aaacaacttaattaagagcgcttatcatatatgtgttgatgtacaagttatttctataacaaaagataaaa 643  Q
    ||||||||||||||||  | ||||||||||| ||||| ||||| ||  |||||||||||||||||||||||    
T  36638651 aaacaacttaattaag--cacttatcatataggtgttaatgtataaactatttctataacaaaagataaaa 36638719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 564 - 644
Target Start/End: Complemental strand, 29117104 - 29117026
Alignment:
Q  564 tgtttgtagaaacaacttaattaagagcgcttatcatatatgtgttgatgtacaagttatttctataacaaaagataaaat 644  Q
    ||||||||  |||| ||||||||||  |||||||||||||  || | ||||| | ||||||||||||||||||||||||||    
T  29117104 tgtttgtatgaacatcttaattaag--cgcttatcatatagctgattatgtatatgttatttctataacaaaagataaaat 29117026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 592 - 644
Target Start/End: Complemental strand, 35135810 - 35135758
Alignment:
Q  592 gcttatcatatatgtgttgatgtacaagttatttctataacaaaagataaaat 644  Q
    ||||| |||||| ||||| ||||| ||| ||||||||||||||||||||||||    
T  35135810 gcttaacatataagtgtttatgtataagatatttctataacaaaagataaaat 35135758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 589 - 644
Target Start/End: Original strand, 26516217 - 26516272
Alignment:
Q  589 agcgcttatcatatatgtgttgatgtacaagttatttctataacaaaagataaaat 644  Q
    ||||||||||||||| ||| | ||||| ||| |||||||| |||||||||||||||    
T  26516217 agcgcttatcatataagtgcttatgtataagctatttctaaaacaaaagataaaat 26516272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 592 - 642
Target Start/End: Original strand, 38033890 - 38033940
Alignment:
Q  592 gcttatcatatatgtgttgatgtacaagttatttctataacaaaagataaa 642  Q
    |||||||| ||| ||||| ||||| ||||||||| ||||||||||||||||    
T  38033890 gcttatcaaataagtgtttatgtataagttatttatataacaaaagataaa 38033940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 592 - 644
Target Start/End: Complemental strand, 20982283 - 20982231
Alignment:
Q  592 gcttatcatatatgtgttgatgtacaagttatttctataacaaaagataaaat 644  Q
    |||||||||||| ||| | ||||| ||| ||||||||||||||| ||||||||    
T  20982283 gcttatcatataagtgcttatgtataagctatttctataacaaaggataaaat 20982231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.00000000002; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 592 - 644
Target Start/End: Complemental strand, 40728566 - 40728514
Alignment:
Q  592 gcttatcatatatgtgttgatgtacaagttatttctataacaaaagataaaat 644  Q
    |||||||||||| ||||| ||| | ||||||||||||||||||||||||||||    
T  40728566 gcttatcatataagtgttcatgcataagttatttctataacaaaagataaaat 40728514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 594 - 644
Target Start/End: Original strand, 29699178 - 29699228
Alignment:
Q  594 ttatcatatatgtgttgatgtacaagttatttctataacaaaagataaaat 644  Q
    ||||||||||  || | ||||||||||||||||||||||||||||||||||    
T  29699178 ttatcatataaatgcttatgtacaagttatttctataacaaaagataaaat 29699228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 605 - 642
Target Start/End: Original strand, 9928191 - 9928228
Alignment:
Q  605 gtgttgatgtacaagttatttctataacaaaagataaa 642  Q
    ||||| ||||| ||||||||||||||||||||||||||    
T  9928191 gtgtttatgtataagttatttctataacaaaagataaa 9928228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 598 - 638
Target Start/End: Complemental strand, 10062269 - 10062229
Alignment:
Q  598 catatatgtgttgatgtacaagttatttctataacaaaaga 638  Q
    |||||||||||| ||||| |||||||||||||| |||||||    
T  10062269 catatatgtgtttatgtataagttatttctataccaaaaga 10062229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 592 - 644
Target Start/End: Original strand, 14482124 - 14482176
Alignment:
Q  592 gcttatcatatatgtgttgatgtacaagttatttctataacaaaagataaaat 644  Q
    |||||||||||| ||| | ||||| ||  ||||||||||||||||||||||||    
T  14482124 gcttatcatataagtgcttatgtataaactatttctataacaaaagataaaat 14482176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000006; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 593 - 644
Target Start/End: Complemental strand, 6552417 - 6552366
Alignment:
Q  593 cttatcatatatgtgttgatgtacaagttatttctataacaaaagataaaat 644  Q
    ||||||||||| ||| | |||||||||||||||||| |||||||||||||||    
T  6552417 cttatcatataagtgcttatgtacaagttatttctacaacaaaagataaaat 6552366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 591 - 644
Target Start/End: Original strand, 44241781 - 44241834
Alignment:
Q  591 cgcttatcatatatgtgttgatgtacaagttatttctataacaaaagataaaat 644  Q
    ||||||||||||| ||||  ||||| |||||||||||||||||| |||||||||    
T  44241781 cgcttatcatataagtgtgtatgtataagttatttctataacaacagataaaat 44241834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 592 - 644
Target Start/End: Original strand, 25511549 - 25511601
Alignment:
Q  592 gcttatcatatatgtgttgatgtacaagttatttctataacaaaagataaaat 644  Q
    |||||||||||| |||||| |||| || |||||||||||||||||||| ||||    
T  25511549 gcttatcatataagtgttgttgtataaattatttctataacaaaagatgaaat 25511601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 611 - 644
Target Start/End: Complemental strand, 1432096 - 1432063
Alignment:
Q  611 atgtacaagttatttctataacaaaagataaaat 644  Q
    ||||| ||||||||||||||||||||||||||||    
T  1432096 atgtataagttatttctataacaaaagataaaat 1432063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 593 - 642
Target Start/End: Original strand, 2223071 - 2223120
Alignment:
Q  593 cttatcatatatgtgttgatgtacaagttatttctataacaaaagataaa 642  Q
    |||||| |||| ||||| ||||| ||| ||||||||||||||||||||||    
T  2223071 cttatcgtataagtgtttatgtataagctatttctataacaaaagataaa 2223120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 596 - 644
Target Start/End: Original strand, 24973870 - 24973918
Alignment:
Q  596 atcatatatgtgttgatgtacaagttatttctataacaaaagataaaat 644  Q
    |||||||| ||| | ||||| ||| ||||||||||||||||||||||||    
T  24973870 atcatataagtgcttatgtaaaagctatttctataacaaaagataaaat 24973918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 592 - 644
Target Start/End: Original strand, 24975826 - 24975878
Alignment:
Q  592 gcttatcatatatgtgttgatgtacaagttatttctataacaaaagataaaat 644  Q
    |||||||||||| ||| ||||||| ||  || |||||||||||||||||||||    
T  24975826 gcttatcatataagtgctgatgtataatctacttctataacaaaagataaaat 24975878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 573 - 644
Target Start/End: Original strand, 35536012 - 35536081
Alignment:
Q  573 aaacaacttaattaagagcgcttatcatatatgtgttgatgtacaagttatttctataacaaaagataaaat 644  Q
    |||||||||||||  ||||||||||||||||   | | ||||| ||| ||||||||||||| ||||||||||    
T  35536012 aaacaacttaatt--gagcgcttatcatataaaggcttatgtataagctatttctataacataagataaaat 35536081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 592 - 644
Target Start/End: Original strand, 49060462 - 49060514
Alignment:
Q  592 gcttatcatatatgtgttgatgtacaagttatttctataacaaaagataaaat 644  Q
    |||||||||||| || || ||||| ||| |||||||||||||||| |||||||    
T  49060462 gcttatcatataagtatttatgtataagctatttctataacaaaaaataaaat 49060514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000006; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 593 - 644
Target Start/End: Original strand, 49557064 - 49557115
Alignment:
Q  593 cttatcatatatgtgttgatgtacaagttatttctataacaaaagataaaat 644  Q
    ||||||||||| ||| || |||| ||||||||||||||||||||||||||||    
T  49557064 cttatcatataagtgctgctgtataagttatttctataacaaaagataaaat 49557115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 592 - 644
Target Start/End: Complemental strand, 16982084 - 16982032
Alignment:
Q  592 gcttatcatatatgtgttgatgtacaagttatttctataacaaaagataaaat 644  Q
    |||||||||||| ||||| ||||| || ||||||| |||||||||||||||||    
T  16982084 gcttatcatataagtgtttatgtataacttatttcgataacaaaagataaaat 16982032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 573 - 644
Target Start/End: Complemental strand, 33339585 - 33339516
Alignment:
Q  573 aaacaacttaattaagagcgcttatcatatatgtgttgatgtacaagttatttctataacaaaagataaaat 644  Q
    |||||||||||||||| |   |||||||||| ||||| ||||| ||| |||||||||| |||||||||||||    
T  33339585 aaacaacttaattaagtgg--ttatcatataggtgtttatgtataagctatttctataccaaaagataaaat 33339516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 576 - 642
Target Start/End: Complemental strand, 4202291 - 4202227
Alignment:
Q  576 caacttaattaagagcgcttatcatatatgtgttgatgtacaagttatttctataacaaaagataaa 642  Q
    |||||||||||||  || |||||||||| ||| | | ||| ||||||||||||||||||||||||||    
T  4202291 caacttaattaag--cgtttatcatataagtgcttaagtataagttatttctataacaaaagataaa 4202227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 589 - 644
Target Start/End: Original strand, 15437882 - 15437937
Alignment:
Q  589 agcgcttatcatatatgtgttgatgtacaagttatttctataacaaaagataaaat 644  Q
    |||| ||||||| |||||||| ||||| ||| |||||||||||||||| |||||||    
T  15437882 agcgattatcatctatgtgtttatgtaaaagctatttctataacaaaaaataaaat 15437937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 611 - 644
Target Start/End: Original strand, 4549807 - 4549840
Alignment:
Q  611 atgtacaagttatttctataacaaaagataaaat 644  Q
    ||||||||| ||||||||||||||||||||||||    
T  4549807 atgtacaagctatttctataacaaaagataaaat 4549840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 611 - 644
Target Start/End: Complemental strand, 4700195 - 4700162
Alignment:
Q  611 atgtacaagttatttctataacaaaagataaaat 644  Q
    ||||||||| ||||||||||||||||||||||||    
T  4700195 atgtacaagctatttctataacaaaagataaaat 4700162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 596 - 644
Target Start/End: Original strand, 43333625 - 43333673
Alignment:
Q  596 atcatatatgtgttgatgtacaagttatttctataacaaaagataaaat 644  Q
    |||||||||||||| ||||| |||||||||||| || |||| |||||||    
T  43333625 atcatatatgtgttcatgtataagttatttctagaagaaaatataaaat 43333673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 612 - 644
Target Start/End: Original strand, 49517012 - 49517044
Alignment:
Q  612 tgtacaagttatttctataacaaaagataaaat 644  Q
    |||| ||||||||||||||||||||||||||||    
T  49517012 tgtataagttatttctataacaaaagataaaat 49517044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0508 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold0508
Description:

Target: scaffold0508; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 592 - 644
Target Start/End: Complemental strand, 9923 - 9871
Alignment:
Q  592 gcttatcatatatgtgttgatgtacaagttatttctataacaaaagataaaat 644  Q
    |||||||||||| ||| | ||||| |||||||||||||||||||| |||||||    
T  9923 gcttatcatataggtgcttatgtataagttatttctataacaaaaaataaaat 9871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 589 - 644
Target Start/End: Complemental strand, 16790239 - 16790184
Alignment:
Q  589 agcgcttatcatatatgtgttgatgtacaagttatttctataacaaaagataaaat 644  Q
    |||| |||||||||| ||| | || || ||||||||||||||||||||||||||||    
T  16790239 agcgtttatcatataagtgcttatatataagttatttctataacaaaagataaaat 16790184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 611 - 644
Target Start/End: Original strand, 36887463 - 36887496
Alignment:
Q  611 atgtacaagttatttctataacaaaagataaaat 644  Q
    ||||| ||||||||||||||||||||||||||||    
T  36887463 atgtataagttatttctataacaaaagataaaat 36887496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 592 - 644
Target Start/End: Complemental strand, 41028999 - 41028947
Alignment:
Q  592 gcttatcatatatgtgttgatgtacaagttatttctataacaaaagataaaat 644  Q
    |||||||||||| ||| | ||||| ||| |||||||||||||||||| |||||    
T  41028999 gcttatcatataagtgcttatgtataagctatttctataacaaaagaaaaaat 41028947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0100 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: scaffold0100
Description:

Target: scaffold0100; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 594 - 644
Target Start/End: Original strand, 42541 - 42591
Alignment:
Q  594 ttatcatatatgtgttgatgtacaagttatttctataacaaaagataaaat 644  Q
    |||||||||| ||| | ||||| |||| |||||||||||||||||||||||    
T  42541 ttatcatataagtgcttatgtataagtcatttctataacaaaagataaaat 42591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0590 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0590
Description:

Target: scaffold0590; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 595 - 644
Target Start/End: Complemental strand, 1219 - 1170
Alignment:
Q  595 tatcatatatgtgttgatgtacaagttatttctataacaaaagataaaat 644  Q
    ||||||||| ||| | ||||| ||| ||||||||||||||||||||||||    
T  1219 tatcatataagtgcttatgtataagctatttctataacaaaagataaaat 1170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0275 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0275
Description:

Target: scaffold0275; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 595 - 644
Target Start/End: Original strand, 2756 - 2805
Alignment:
Q  595 tatcatatatgtgttgatgtacaagttatttctataacaaaagataaaat 644  Q
    ||||||||| ||| | ||||| ||| ||||||||||||||||||||||||    
T  2756 tatcatataagtgcttatgtataagctatttctataacaaaagataaaat 2805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University