View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13045_low_2 (Length: 618)

Name: NF13045_low_2
Description: NF13045
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13045_low_2
NF13045_low_2
[»] chr2 (3 HSPs)
chr2 (10-601)||(11330243-11330822)
chr2 (505-601)||(7178079-7178175)
chr2 (354-433)||(37423059-37423137)
[»] scaffold0288 (1 HSPs)
scaffold0288 (315-433)||(9860-9979)
[»] chr1 (4 HSPs)
chr1 (315-419)||(5362808-5362908)
chr1 (352-435)||(35409005-35409088)
chr1 (315-419)||(52319052-52319157)
chr1 (380-432)||(3523174-3523226)
[»] chr5 (8 HSPs)
chr5 (351-429)||(41658759-41658837)
chr5 (351-441)||(41685853-41685942)
chr5 (314-433)||(37097872-37097987)
chr5 (349-421)||(864428-864501)
chr5 (395-432)||(17896035-17896072)
chr5 (333-406)||(38646660-38646732)
chr5 (386-438)||(29694191-29694243)
chr5 (405-441)||(32497212-32497248)
[»] chr4 (4 HSPs)
chr4 (384-434)||(6861263-6861313)
chr4 (323-375)||(33911970-33912022)
chr4 (352-431)||(33827431-33827509)
chr4 (380-433)||(20619746-20619799)
[»] scaffold0301 (1 HSPs)
scaffold0301 (315-404)||(5879-5967)
[»] chr8 (1 HSPs)
chr8 (323-375)||(35908605-35908657)


Alignment Details
Target: chr2 (Bit Score: 506; Significance: 0; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 506; E-Value: 0
Query Start/End: Original strand, 10 - 601
Target Start/End: Original strand, 11330243 - 11330822
Alignment:
Q  10 ataattctgaggtacatactacattggaacaagaataagataatagtttgattaaattttcagttgctactgatcatcttattagatatagcgaatggaa 109  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  11330243 ataattctgaggtacatactacattggaacaagaataagataatagtttgattaaattttcagttgctactgatcatcttattagatatagcaaatggaa 11330342  T
Q  110 taagtaacataacctttcagaaaagactaatattaacaatgtccaatactatgttgagcaggttagcctagatattaccctaagtagagtgcctacttag 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11330343 taagtaacataacctttcagaaaagactaatattaacaatgtccaatactatgttgagcaggttagcctagatattaccctaagtagagtgcctacttag 11330442  T
Q  210 attatagcagtaaaattcatcaaactctaaagggaagtgaaattggacattcatgcagcaacttcaatcaataagtataacttttttctataggcaaatg 309  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11330443 attatagcagtaaaattcatcaaactctaaagggaagtgaaattggacattcatgcagcaacttcaatcaataagtataacttttttctataggcaaatg 11330542  T
Q  310 ttagttgttacttgttagtaaattgttagagggaagggggaaatgttagtttccggggatcgaactcggaacctccttcttaaatctccttcaacgtccc 409  Q
    |||||||||||||||||||||||| |||||||||||||||            ||||||||||||||||||||||||||||||||||||||||||||||||    
T  11330543 ttagttgttacttgttagtaaatttttagagggaaggggg------------ccggggatcgaactcggaacctccttcttaaatctccttcaacgtccc 11330630  T
Q  410 ttagctcaccgaccgagctacctatgtgggactataacccaatttaactgaagctattagcctaaagnnnnnnnattttcctctactgtactcatttaat 509  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||    
T  11330631 ttagctcaccaaccgagctacctatgtgggactataacccaatttaactgaagctattagcctaaagtttttttattttcctctactgtactcatttaat 11330730  T
Q  510 atccgaattcttttgttgcaggtccgaaacattgctttgggaattgtatctcgtagggttaattggaaacagccgactgtgatggagacaat 601  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||    
T  11330731 atccgaattcttttgttgcaggtccggaacattgctttgggaattgtatctcgcaggtttaattggaaacagccgactgtgatggagacaat 11330822  T

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Target: chr2; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 505 - 601
Target Start/End: Complemental strand, 7178175 - 7178079
Alignment:
Q  505 ttaatatccgaattcttttgttgcaggtccgaaacattgctttgggaattgtatctcgtagggttaattggaaacagccgactgtgatggagacaat 601  Q
    |||||||||  ||| |||||||||||||||| |||||||| |||||||||||||| ||||| || ||||||||||| | |||||| |||||||||||    
T  7178175 ttaatatcctgattattttgttgcaggtccggaacattgcattgggaattgtatcccgtagagtaaattggaaacaactgactgttatggagacaat 7178079  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 354 - 433
Target Start/End: Original strand, 37423059 - 37423137
Alignment:
Q  354 gttagtttccggggatcgaactcggaacctccttcttaaatctccttcaacgtcccttagctcaccgaccgagctaccta 433  Q
    ||||||||||||| ||||||| ||| || | ||||||| | |||||||||  |||||||||||||| || ||||||||||    
T  37423059 gttagtttccggg-atcgaacccgggactttcttcttataactccttcaatatcccttagctcaccaactgagctaccta 37423137  T

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Target: scaffold0288 (Bit Score: 60; Significance: 3e-25; HSPs: 1)
Name: scaffold0288
Description:

Target: scaffold0288; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 315 - 433
Target Start/End: Complemental strand, 9979 - 9860
Alignment:
Q  315 tgttacttgttagtaaattgtta-gagggaagggggaaatgttagtttccggggatcgaactcggaacctccttcttaaatctccttcaacgtcccttag 413  Q
    ||||| ||||||||||||||||| ||| | ||||||||||||||||||| |||  || ||| ||| ||||||||||||||||||||||||| ||||| ||    
T  9979 tgttagttgttagtaaattgttaagagaggagggggaaatgttagtttctgggagtcaaacccgggacctccttcttaaatctccttcaacatccctgag 9880  T
Q  414 ctcaccgaccgagctaccta 433  Q
    |||||| || ||||||||||    
T  9879 ctcaccaactgagctaccta 9860  T

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Target: chr1 (Bit Score: 50; Significance: 3e-19; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 315 - 419
Target Start/End: Complemental strand, 5362908 - 5362808
Alignment:
Q  315 tgttacttgttagtaaattgttagagggaagggggaaatgttagtttccggggatcgaactcggaacctccttcttaaatctccttcaacgtcccttagc 414  Q
    ||||| |||||||||  ||||| ||||||||||| |||||||||||||| || || |||| ||| ||||||||||||||||||||||||| |||||||||    
T  5362908 tgttagttgttagta--ttgttggagggaagggg-aaatgttagtttccagg-attgaacacgggacctccttcttaaatctccttcaacctcccttagc 5362813  T
Q  415 tcacc 419  Q
    |||||    
T  5362812 tcacc 5362808  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 352 - 435
Target Start/End: Original strand, 35409005 - 35409088
Alignment:
Q  352 atgttagtttccggggatcgaactcggaacctccttcttaaatctccttcaacgtcccttagctcaccgaccgagctacctatg 435  Q
    ||||||||||| || |||  ||||||||||||||| ||| || ||||||||||| ||||||| ||||  ||||| ||| |||||    
T  35409005 atgttagtttctggagatgaaactcggaacctcctcctttaaactccttcaacgacccttagttcactaaccgaactatctatg 35409088  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 315 - 419
Target Start/End: Complemental strand, 52319157 - 52319052
Alignment:
Q  315 tgttacttgttagtaaattgttagag-ggaagggggaaatgttagtttccggggatcgaactcgga-acctccttcttaaatctccttcaacgtccctta 412  Q
    ||||| ||||||| ||||||||| || || |||| |||||||||||||| | | |||||| || || ||||||  |||||||||||||||||| ||||||    
T  52319157 tgttagttgttagcaaattgttaaagtgggagggagaaatgttagtttctgagaatcgaa-tctgagacctccggcttaaatctccttcaacgcccctta 52319059  T
Q  413 gctcacc 419  Q
    | |||||    
T  52319058 gttcacc 52319052  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 380 - 432
Target Start/End: Original strand, 3523174 - 3523226
Alignment:
Q  380 acctccttcttaaatctccttcaacgtcccttagctcaccgaccgagctacct 432  Q
    ||||||| |||||| ||||||||  |||||||| |||||| ||||||||||||    
T  3523174 acctcctgcttaaaactccttcattgtcccttatctcaccaaccgagctacct 3523226  T

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Target: chr5 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 351 - 429
Target Start/End: Original strand, 41658759 - 41658837
Alignment:
Q  351 aatgttagtttccggggatcgaactcggaacctccttcttaaatctccttcaacgtcccttagctcaccgaccgagcta 429  Q
    |||||||||||||||| ||| ||  ||| | |||||||||||| ||||||| ||||||||||||||||| |||||||||    
T  41658759 aatgttagtttccgggaatcaaatccgggaactccttcttaaacctccttcgacgtcccttagctcaccaaccgagcta 41658837  T

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Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 351 - 441
Target Start/End: Original strand, 41685853 - 41685942
Alignment:
Q  351 aatgttagtttccggggatcgaactcggaacctccttcttaaatctccttcaacgtcccttagctcaccgaccgagctacctatgtgggac 441  Q
    |||||||||||||||| || |||| | | |||||||||| ||||||||||  ||||||||||  |||||||| ||||||||||||||||||    
T  41685853 aatgttagtttccggg-atggaacccaggacctccttctcaaatctcctttgacgtcccttatatcaccgactgagctacctatgtgggac 41685942  T

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Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 314 - 433
Target Start/End: Complemental strand, 37097987 - 37097872
Alignment:
Q  314 ttgttacttgttagtaaattgttagagggaagggggaaatgttagtttccggggatcgaactcggaacctccttcttaaatctccttcaacgtcccttag 413  Q
    |||||| ||||| |||||||| ||||  | || |||||||||||||| | | |||| |||| |||||||| |||   ||||||||||||| |||||||||    
T  37097987 ttgttagttgttcgtaaattggtagataggagagggaaatgttagtt-ctgaggatagaacccggaacctactt---aaatctccttcaatgtcccttag 37097892  T
Q  414 ctcaccgaccgagctaccta 433  Q
    |||||| |||||||||||||    
T  37097891 ctcaccaaccgagctaccta 37097872  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 349 - 421
Target Start/End: Complemental strand, 864501 - 864428
Alignment:
Q  349 gaaatgttagtttccggggatcgaactcggaacctccttcttaaatctccttcaacgtccc-ttagctcaccga 421  Q
    |||||||||||||||||||||| ||| ||| | ||||| ||| || |||||| | |||||| ||||||||||||    
T  864501 gaaatgttagtttccggggatcaaacccgggatctcctccttcaaactccttgatcgtccctttagctcaccga 864428  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 395 - 432
Target Start/End: Complemental strand, 17896072 - 17896035
Alignment:
Q  395 ctccttcaacgtcccttagctcaccgaccgagctacct 432  Q
    ||||||||| ||||||||||||||| ||||||||||||    
T  17896072 ctccttcaatgtcccttagctcaccaaccgagctacct 17896035  T

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Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 333 - 406
Target Start/End: Complemental strand, 38646732 - 38646660
Alignment:
Q  333 tgttagagggaagggggaaatgttagtttccggggatcgaactcggaacctccttcttaaatctccttcaacgt 406  Q
    |||||||||  |||| ||||||||||||| || |||||||||||  ||| ||| || |||||||||||||||||    
T  38646732 tgttagaggagagggagaaatgttagttttcgaggatcgaactcaaaacatccatc-taaatctccttcaacgt 38646660  T

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Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 386 - 438
Target Start/End: Complemental strand, 29694243 - 29694191
Alignment:
Q  386 ttcttaaatctccttcaacgtcccttagctcaccgaccgagctacctatgtgg 438  Q
    ||||||||||||||||||| | |||| | | ||| ||||||||||||||||||    
T  29694243 ttcttaaatctccttcaacattcctttggttaccaaccgagctacctatgtgg 29694191  T

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Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 405 - 441
Target Start/End: Original strand, 32497212 - 32497248
Alignment:
Q  405 gtcccttagctcaccgaccgagctacctatgtgggac 441  Q
    ||||||||||||||  |||||||||||||||||||||    
T  32497212 gtcccttagctcactaaccgagctacctatgtgggac 32497248  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 384 - 434
Target Start/End: Complemental strand, 6861313 - 6861263
Alignment:
Q  384 ccttcttaaatctccttcaacgtcccttagctcaccgaccgagctacctat 434  Q
    |||||||||||||| ||||| ||||||||||||||| ||||| ||||||||    
T  6861313 ccttcttaaatctctttcaatgtcccttagctcaccaaccgaactacctat 6861263  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 323 - 375
Target Start/End: Complemental strand, 33912022 - 33911970
Alignment:
Q  323 gttagtaaattgttagagggaagggggaaatgttagtttccggggatcgaact 375  Q
    ||||||| |||||||||||| ||||||||||||||||||| ||| ||| ||||    
T  33912022 gttagtacattgttagaggggagggggaaatgttagtttctgggaatccaact 33911970  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 352 - 431
Target Start/End: Complemental strand, 33827509 - 33827431
Alignment:
Q  352 atgttagtttccggggatcgaactcggaacctccttcttaaatctccttcaacgtcccttagctcaccgaccgagctacc 431  Q
    ||||||||||||||| ||||||| ||  ||||||| |||||| |||||||||||| ||||| | |||| | |||||||||    
T  33827509 atgttagtttccggg-atcgaacccgagacctcctccttaaagctccttcaacgttccttaacgcaccaatcgagctacc 33827431  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 380 - 433
Target Start/End: Complemental strand, 20619799 - 20619746
Alignment:
Q  380 acctccttcttaaatctccttcaacgtcccttagctcaccgaccgagctaccta 433  Q
    ||||||||||| || || || ||||||||||||||||||| |||||||| ||||    
T  20619799 acctccttcttcaaactgctacaacgtcccttagctcaccaaccgagctgccta 20619746  T

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Target: scaffold0301 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: scaffold0301
Description:

Target: scaffold0301; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 315 - 404
Target Start/End: Complemental strand, 5967 - 5879
Alignment:
Q  315 tgttacttgttagtaaattgttagagggaagggggaaatgttagtttccggggatcgaactcggaacctccttcttaaatctccttcaac 404  Q
    ||||| |||||||||||||||| |||||||  | ||||| |||||||||| |||||||||    || ||||||||||||| |||||||||    
T  5967 tgttagttgttagtaaattgttggagggaatagagaaat-ttagtttccgtggatcgaaccgaaaatctccttcttaaatttccttcaac 5879  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 323 - 375
Target Start/End: Complemental strand, 35908657 - 35908605
Alignment:
Q  323 gttagtaaattgttagagggaagggggaaatgttagtttccggggatcgaact 375  Q
    ||||||| |||||||||||| ||||||||||||||||||| ||| ||| ||||    
T  35908657 gttagtacattgttagaggggagggggaaatgttagtttctgggaatccaact 35908605  T

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