View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13046_high_1 (Length: 1633)
Name: NF13046_high_1
Description: NF13046
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13046_high_1 |
 | |
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| [»] scaffold0199 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 1515; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 1515; E-Value: 0
Query Start/End: Original strand, 18 - 1623
Target Start/End: Complemental strand, 50455736 - 50454124
Alignment:
| Q |
18 |
acctgttgatcccgttttcatcatgttgcccttattcgagaaagcaaggatgaaggtaatttttgtttggaaattgcaagacagtagtcatttatttttc |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
50455736 |
acctgttgatcccgttttcatcatgttgcccttattcgagaaagcaaggatgaaggtaatttttgtttggaaattgcaagacagtagtcatttatttttc |
50455637 |
T |
|
| Q |
118 |
ctgttctttcccatttgggtcattcatccgtcaattgttgctgataaagcaaataaggttttaattgcacatctgatattcagtgctgttagcataaaca |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50455636 |
ctgttctttcccatttgggtcattcatccgtcaattgttgctgataaagcaaataaggttttaattgcacatctgatattcagtgctgttagcataaaca |
50455537 |
T |
|
| Q |
218 |
cttacaagctatcttcataagctctgccaaacagtttcagaagtacttattctagtatataagctcaactaagttaatctaaacagaccctaatagtaat |
317 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50455536 |
cttacaagctatcttcataagctctgccaaacagtttcagaagcacttattctagtatataagctcaactaagttaatctaaacagaccctaatagtaat |
50455437 |
T |
|
| Q |
318 |
agctataagtttataacgataaaggaactcacacacacatagtcaaagatatgccttatctatgaggtctgctaaacctttacttttgagttttgtgaag |
417 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50455436 |
agctataagtttataacgataaaggaacgcacacacacatagtcaaagatatgccttatctatgaggtctgctaaacctttacttttgagttttgtgaag |
50455337 |
T |
|
| Q |
418 |
gattagttaggtgtaaattgtacgtcccaaccccgaaaaaattgtatcatgcataattgcatatcactggttctttaaaatgcatgcagaaaggcgatga |
517 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50455336 |
gattaattaggtgtaaattgtacgtcccaaccccgaaaaaattgtatcatgcataattgcatatcactggttctttaaaatgcatgcagaaaggcgatga |
50455237 |
T |
|
| Q |
518 |
tcttggaaaattcaggcaattggacgagatcttgtttattgatgggtatccaggctatcagcagttaatgtcccttgttgagaactgtatgcaagtagtt |
617 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50455236 |
tcttggaaaattcaggcaattggacgagatcttgtttattgatgggtatccaggctatcagcagttaatgtcccttgttgagaactgtatgcaagtagtt |
50455137 |
T |
|
| Q |
618 |
tgtgaagtcaaaggtagaattcttgtatcttgtataccttctacttacaaattcagtttggactttggccatgtgtacaatttaggtagtttaatgggca |
717 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50455136 |
tgtgaagtcaaaggtagaattcttgtatcttgtataccttctacttacaaattcagtttggactttggccatgtgtacaatttaggtagtttaatgggca |
50455037 |
T |
|
| Q |
718 |
gatattgaagaaagaaaatgagaagtccatggttggctttatgtcttttattctggttgagtgccaagtatggtgacctcattgctaatgtttttcttaa |
817 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50455036 |
gatattgaagaaagaaaatgagaagtccatggttggctttatgtcttttattctggttgagtgccaagtatggtgacctcattgctaatgtttttcttaa |
50454937 |
T |
|
| Q |
818 |
ttctcccggctctgtgtgtcggtagttctatgttaggtgataggatagattccctctctaatgttgcagtaattctgtctgtaagatttgacatctactg |
917 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
50454936 |
ttctcccggctctgtgtatcggtagttctatgttaggtgataggatagattccctctctaatgttgcagtaattctgtctgtaagatttgacttctactg |
50454837 |
T |
|
| Q |
918 |
taatgagatcatattttatctttagttacggaaattgaatgttagcgtggtgattttaaatctgttctcttctatccttgtgcatatgcagaagttgaat |
1017 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
50454836 |
taatgagatcatattttatctttagttacggaaattgaatgttagcgtggtgattttaaatctgttctcttctatccttgtgcatatgcagaagttggat |
50454737 |
T |
|
| Q |
1018 |
ccttaaaattctttagactcgatgatgtcaaggttctgcgttggttgtgctataaggtttgtctatatctccttgtattttctttattattatta----- |
1112 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50454736 |
ccttaaaattctttagactcgatgatgtcaaggttctgcgttggttgtgctataaggtttgtctatatctccttgtattttctttattattattattatt |
50454637 |
T |
|
| Q |
1113 |
--tatttagtttgcataactttcaatccccctaaaactagcatacagagtataattgcatttgcctagtaattccaccatcatcatcataccataaacct |
1210 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
50454636 |
attatttagtttgcataactttcaacccccctaaaactagcatacagagtataattgcatttgcctagtaattccaccaccatcatcataccataaacct |
50454537 |
T |
|
| Q |
1211 |
tacgtgaaatagcttgatttatagggagtttacattgtagcttacgttttgtcttccgtatatgcttttagaccatacccttgttttgttgctacnnnnn |
1310 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
50454536 |
tacgtgaaatagcttgatttatagggagtttacattgtagcttactttttgtcttccgtatatgcttttagaccatccccttgttttgttgctacaaaaa |
50454437 |
T |
|
| Q |
1311 |
nnntcaccgttattgatgtttttaattttgatttctcgtattttaggtttgtcggctaaaacagacactaccgaagttggataaaaactatgctgctcaa |
1410 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50454436 |
aattcaccgttattgatgtttttaattttgatttctcgtattttaggtttgtcagctaaaacagacactaccgaagttggataaaaactatgctgctcaa |
50454337 |
T |
|
| Q |
1411 |
tcagagaaagacacgggtaaattttctattaccattctgttctgctagcttttggataattttattctatttcaggttaaattgagaagacagatatatt |
1510 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50454336 |
tcagagaaagacacgggtaaattttctattaccattctgttctgctagtttttggataattttattctatttcaggttaaattgagaagacagatatatt |
50454237 |
T |
|
| Q |
1511 |
tgtataaggaaaaggaaaatagttatacagggattcgttgaagtgtgtgcttgtgcatctgctctcagattggtgcctttagctgtattctgtatacatg |
1610 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50454236 |
tgtataaggaaaaggaaaatagttatacagggattcgttgaagtgtgtgcttgtgcatctgctctcagattggtgcctttagctgtattctgtatacatg |
50454137 |
T |
|
| Q |
1611 |
cacaatgatgatg |
1623 |
Q |
| |
|
||||||||||||| |
|
|
| T |
50454136 |
cacaatgatgatg |
50454124 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000006
Query Start/End: Original strand, 233 - 303
Target Start/End: Complemental strand, 49845528 - 49845458
Alignment:
| Q |
233 |
cataagctctgccaaacagtttcagaagtacttattctagtatataagctcaactaagttaatctaaacag |
303 |
Q |
| |
|
|||||||||| ||||| ||||||| |||| |||| ||||||||||||||||| ||||| |||| |||||| |
|
|
| T |
49845528 |
cataagctctcccaaatagtttcataagtttttatactagtatataagctcaaataagtcaatccaaacag |
49845458 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 39; Significance: 0.000000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.000000000003
Query Start/End: Original strand, 233 - 303
Target Start/End: Complemental strand, 2460139 - 2460069
Alignment:
| Q |
233 |
cataagctctgccaaacagtttcagaagtacttattctagtatataagctcaactaagttaatctaaacag |
303 |
Q |
| |
|
|||||||||| |||||||| ||| |||||||||| ||||| ||||||||||| |||||||||| |||||| |
|
|
| T |
2460139 |
cataagctctctcaaacagtctcacaagtacttatgctagtttataagctcaaataagttaatccaaacag |
2460069 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.000000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.000000000003
Query Start/End: Original strand, 233 - 303
Target Start/End: Complemental strand, 27123340 - 27123270
Alignment:
| Q |
233 |
cataagctctgccaaacagtttcagaagtacttattctagtatataagctcaactaagttaatctaaacag |
303 |
Q |
| |
|
|||||||||| |||||||| ||| |||||||||| ||||| ||||||||||| |||||||||| |||||| |
|
|
| T |
27123340 |
cataagctctctcaaacagtctcacaagtacttatgctagtttataagctcaaataagttaatccaaacag |
27123270 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0199 (Bit Score: 33; Significance: 0.00000001; HSPs: 1)
Name: scaffold0199
Description:
Target: scaffold0199; HSP #1
Raw Score: 33; E-Value: 0.00000001
Query Start/End: Original strand, 232 - 312
Target Start/End: Original strand, 6891 - 6971
Alignment:
| Q |
232 |
tcataagctctgccaaacagtttcagaagtacttattctagtatataagctcaactaagttaatctaaacagaccctaata |
312 |
Q |
| |
|
||||||||||| ||||||||| ||| |||| |||| |||||| |||| ||||| ||||| |||||||||||||| |||| |
|
|
| T |
6891 |
tcataagctctcccaaacagtctcacaagtgtttatgctagtagataaactcaaataagtccatctaaacagacccaaata |
6971 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.00000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.00000001
Query Start/End: Original strand, 232 - 312
Target Start/End: Original strand, 1664450 - 1664530
Alignment:
| Q |
232 |
tcataagctctgccaaacagtttcagaagtacttattctagtatataagctcaactaagttaatctaaacagaccctaata |
312 |
Q |
| |
|
||||||||||| ||||||||| ||| |||| |||| |||||| |||| ||||| ||||| |||||||||||||| |||| |
|
|
| T |
1664450 |
tcataagctctcccaaacagtctcacaagtgtttatgctagtagataaactcaaataagtccatctaaacagacccaaata |
1664530 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.0000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 262 - 304
Target Start/End: Complemental strand, 42556565 - 42556523
Alignment:
| Q |
262 |
acttattctagtatataagctcaactaagttaatctaaacaga |
304 |
Q |
| |
|
|||||| ||||||||||||||||| ||||| |||||||||||| |
|
|
| T |
42556565 |
acttatgctagtatataagctcaaataagtcaatctaaacaga |
42556523 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000006
Query Start/End: Original strand, 273 - 310
Target Start/End: Original strand, 39906706 - 39906743
Alignment:
| Q |
273 |
tatataagctcaactaagttaatctaaacagaccctaa |
310 |
Q |
| |
|
||||||||||||||||||| |||| ||||||||||||| |
|
|
| T |
39906706 |
tatataagctcaactaagtcaatccaaacagaccctaa |
39906743 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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