View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13046_high_5 (Length: 284)
Name: NF13046_high_5
Description: NF13046
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13046_high_5 |
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Alignment Details
Target: chr5 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 10 - 267
Target Start/End: Complemental strand, 471115 - 470863
Alignment:
| Q |
10 |
gcagagacgtaggacaatgctaagggaaaattgtatgtatatttaaggaaaaacaattatgcaatatcccattttcattttgcttattttacttgttata |
109 |
Q |
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| T |
471115 |
gcagagacgtaggacaatgctaagggaaaattgtatgtatatttaaggaaaaacaattatgcaatatcccattttcattttgcttattttacttgttata |
471016 |
T |
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| Q |
110 |
ttattaattgaagttttttctttccatactaacttgtaaatatacgttacgttaatcggttcagttggggatgaacttaaaacactagactccttacaat |
209 |
Q |
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| T |
471015 |
ttattaattgaagttttttctttccatactaacttgtaaatatacgtta-----attggttcagttggggatgaacttaaaacactagactccttacaat |
470921 |
T |
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| Q |
210 |
tcaagttttctacaattgaagctgccaccaacaaattttcaagtgagaacgagatagg |
267 |
Q |
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| T |
470920 |
tcaagttttctacaattgaagctgccaccaacaaattttcaagtgagaacgagatagg |
470863 |
T |
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