View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13046_low_2 (Length: 450)

Name: NF13046_low_2
Description: NF13046
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13046_low_2
NF13046_low_2
[»] chr2 (5 HSPs)
chr2 (12-433)||(17464575-17464994)
chr2 (161-267)||(864178-864282)
chr2 (159-240)||(5140046-5140127)
chr2 (159-267)||(7709745-7709850)
chr2 (159-270)||(6951690-6951802)
[»] chr5 (6 HSPs)
chr5 (159-264)||(42958438-42958543)
chr5 (162-267)||(30892104-30892209)
chr5 (162-270)||(5990598-5990706)
chr5 (159-220)||(17190685-17190746)
chr5 (159-229)||(34320936-34321006)
chr5 (159-240)||(28436479-28436560)
[»] chr6 (2 HSPs)
chr6 (159-270)||(7447642-7447752)
chr6 (161-267)||(32439473-32439579)
[»] chr8 (9 HSPs)
chr8 (159-267)||(33440580-33440688)
chr8 (159-269)||(28700548-28700658)
chr8 (197-269)||(14195200-14195272)
chr8 (159-269)||(30085454-30085564)
chr8 (159-233)||(17017591-17017665)
chr8 (159-233)||(17548028-17548102)
chr8 (224-267)||(14727111-14727154)
chr8 (214-269)||(16895236-16895291)
chr8 (159-236)||(6580857-6580933)
[»] chr3 (12 HSPs)
chr3 (159-269)||(29235642-29235752)
chr3 (162-269)||(54187008-54187115)
chr3 (159-269)||(42780665-42780775)
chr3 (159-268)||(13639398-13639507)
chr3 (162-267)||(48543222-48543327)
chr3 (160-268)||(38602804-38602912)
chr3 (159-269)||(20909369-20909478)
chr3 (195-253)||(54186938-54186996)
chr3 (214-267)||(54140759-54140812)
chr3 (231-267)||(8700200-8700236)
chr3 (231-267)||(9052087-9052123)
chr3 (159-239)||(46893422-46893502)
[»] chr1 (8 HSPs)
chr1 (159-267)||(19078908-19079016)
chr1 (159-267)||(19126796-19126904)
chr1 (161-267)||(24886034-24886140)
chr1 (162-273)||(29068069-29068180)
chr1 (159-270)||(52444453-52444563)
chr1 (159-269)||(31602056-31602164)
chr1 (161-239)||(11709656-11709734)
chr1 (159-263)||(17642352-17642456)
[»] chr7 (7 HSPs)
chr7 (187-269)||(43930063-43930145)
chr7 (187-270)||(36738446-36738529)
chr7 (159-264)||(17878680-17878785)
chr7 (159-269)||(41873512-41873622)
chr7 (159-253)||(47821990-47822084)
chr7 (159-236)||(557453-557530)
chr7 (159-267)||(46947838-46947945)
[»] chr4 (6 HSPs)
chr4 (162-267)||(31699558-31699663)
chr4 (202-267)||(6540220-6540285)
chr4 (159-236)||(43480270-43480347)
chr4 (225-268)||(16650597-16650640)
chr4 (159-234)||(51475240-51475315)
chr4 (159-231)||(37306482-37306554)


Alignment Details
Target: chr2 (Bit Score: 355; Significance: 0; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 12 - 433
Target Start/End: Original strand, 17464575 - 17464994
Alignment:
Q  12 aatactcatagatgtaatcacacttgatcgaactgcatgaacaaataattatgttccattgtttgtaatttgagtttcaagaaaatgttatgaacgcggt 111  Q
    |||||||||||| |||| ||||||||||| |||||| ||||||||||||| ||||||||||||||||||||||||||| || |||||||||||| |||||    
T  17464575 aatactcatagaggtaagcacacttgatccaactgcgtgaacaaataattgtgttccattgtttgtaatttgagtttctaggaaatgttatgaatgcggt 17464674  T
Q  112 ctttcgaacactcaattttatattatctgaaacgcgtatatgtctaacactttatgtgggatccatttataaagcgtggtacacacatgaatttcaccaa 211  Q
    |||||||||||||||||||||||||| |||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||    
T  17464675 ctttcgaacactcaattttatattatgtgaaacgcgtgtatatctaacactttatgtgggatccatttataaagcgtggtacac--atgaatttcaccaa 17464772  T
Q  212 acaagagaatgaatgttagagagagtgttagaaaaagagtgtccataacactcctctttattcaccctatctaaatataattctattttgaaatttattt 311  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17464773 acaagagaatgaatgttagagagagtgttagaaaaagaatgtccataacactcctctttattcaccctatctaaatataattctattttgaaatttattt 17464872  T
Q  312 ggccttttaagtatggagaataaattttaaatcgtccattgaactgatcatttcctaattaaaatattgtctttaatagatgaagtgcaagttgctttta 411  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17464873 ggccttttaagtatggagaataaattttaaatcgtccattgaactaatcatttcctaattaaaatattgtctttaatagatgaagtgcaagttgctttta 17464972  T
Q  412 aagaaagcaattcgttgataag 433  Q
    || |||||||||||||||||||    
T  17464973 aacaaagcaattcgttgataag 17464994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 161 - 267
Target Start/End: Original strand, 864178 - 864282
Alignment:
Q  161 ctttatgtgggatccatttataaagcgtggtacacacatgaatttcaccaaacaagagaatgaatgttagagagagtgttagaaaaagagtgtccataac 260  Q
    ||||||||||||||||||| ||| | ||||||| ||||||||||||||| || |||||| ||| ||||  |||||||||| |||| ||||||| |||| |    
T  864178 ctttatgtgggatccatttctaatgtgtggtacccacatgaatttcacccaataagagagtgagtgtt--agagagtgtttgaaagagagtgttcatagc 864275  T
Q  261 actcctc 267  Q
    |||||||    
T  864276 actcctc 864282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 159 - 240
Target Start/End: Original strand, 5140046 - 5140127
Alignment:
Q  159 cactttatgtgggatccatttataaagcgtggtacacacatgaatttcaccaaacaagagaatgaatgttagagagagtgtt 240  Q
    |||||||||||||||||||||  || | ||||||| ||||||||||||||  || |||||| ||| ||| | ||||||||||    
T  5140046 cactttatgtgggatccattttcaatgtgtggtacccacatgaatttcactcaataagagagtgagtgtcatagagagtgtt 5140127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 159 - 267
Target Start/End: Complemental strand, 7709850 - 7709745
Alignment:
Q  159 cactttatgtgggatccatttataaagcgtggtacacacatgaatttcaccaaacaagagaatgaatgttagagagagtgttagaaaaagagtgtccata 258  Q
    |||||||||||||||| ||||  || | ||||||| ||||| |||| |||| || || ||| ||| ||||||||||  ||||||||| ||||||||||||    
T  7709850 cactttatgtgggatctatttccaatgtgtggtacccacataaatt-cacccaataaaagagtgagtgttagagag--tgttagaaagagagtgtccata 7709754  T
Q  259 acactcctc 267  Q
     ||||||||    
T  7709753 gcactcctc 7709745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 159 - 270
Target Start/End: Complemental strand, 6951802 - 6951690
Alignment:
Q  159 cactttatgtgggatccatttataaagcgtggtacacacatgaattt-caccaaacaagagaatgaatgttagagagagtgttagaaaaagagtgtccat 257  Q
    |||||||||||||||||||||  || | |||| || ||||||||||| |||  || |||||| | | ||| | | ||||||||||||| ||||||| |||    
T  6951802 cactttatgtgggatccattttcaatgtgtggcacccacatgaattttcactcaataagagagttagtgtcacaaagagtgttagaaagagagtgtacat 6951703  T
Q  258 aacactcctcttt 270  Q
    |||||||| ||||    
T  6951702 aacactccgcttt 6951690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 70; Significance: 2e-31; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 159 - 264
Target Start/End: Complemental strand, 42958543 - 42958438
Alignment:
Q  159 cactttatgtgggatccatttataaagcgtggtacacacatgaatttcaccaaacaagagaatgaatgttagagagagtgttagaaaaagagtgtccata 258  Q
    |||||||||||||||||||||  || ||||||||| |||||||||||||||||| || | | ||| ||||||||||||||||||||||||||||||||||    
T  42958543 cactttatgtgggatccatttccaatgcgtggtacccacatgaatttcaccaaataaaaaagtgactgttagagagagtgttagaaaaagagtgtccata 42958444  T
Q  259 acactc 264  Q
    ||||||    
T  42958443 acactc 42958438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 162 - 267
Target Start/End: Complemental strand, 30892209 - 30892104
Alignment:
Q  162 tttatgtgggatccatttataaagcgtggtacacacatgaatttcaccaaacaagagaatgaatgttagagagagtgttagaaaaagagtgtccataaca 261  Q
    |||||||||||||||||| ||| | ||||||| |||||||| |||||| || |||||| ||| ||||||| ||||||||||||| | |||||||||||||    
T  30892209 tttatgtgggatccatttctaatgtgtggtacccacatgaacttcaccgaataagagagtgagtgttagaaagagtgttagaaagaaagtgtccataaca 30892110  T
Q  262 ctcctc 267  Q
    ||||||    
T  30892109 ctcctc 30892104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 162 - 270
Target Start/End: Original strand, 5990598 - 5990706
Alignment:
Q  162 tttatgtgggatccatttataaagcgtggtacacacatgaatttcaccaaacaagagaatgaatgttagagagagtgttagaaaaagagtgtccataaca 261  Q
    ||||||||||||||||||  || |  |||||| ||||||||||||||| || || ||| ||| |||| |||| ||||||||||| |||||||||||| ||    
T  5990598 tttatgtgggatccatttccaatgtatggtacccacatgaatttcacccaataaaagagtgagtgttggagaaagtgttagaaagagagtgtccatagca 5990697  T
Q  262 ctcctcttt 270  Q
    |||||||||    
T  5990698 ctcctcttt 5990706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 159 - 220
Target Start/End: Original strand, 17190685 - 17190746
Alignment:
Q  159 cactttatgtgggatccatttataaagcgtggtacacacatgaatttcaccaaacaagagaa 220  Q
    ||||||||||||||||||||| ||| | ||||||| | ||||||||||||| ||||||||||    
T  17190685 cactttatgtgggatccatttctaatgtgtggtacccgcatgaatttcacccaacaagagaa 17190746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 159 - 229
Target Start/End: Original strand, 34320936 - 34321006
Alignment:
Q  159 cactttatgtgggatccatttataaagcgtggtacacacatgaatttcaccaaacaagagaatgaatgtta 229  Q
    |||||||||||||||| ||||  ||||  |||||  |||||| |||||||| ||||||||||||| |||||    
T  34320936 cactttatgtgggatctattttcaaagtatggtatccacatggatttcacccaacaagagaatgagtgtta 34321006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 159 - 240
Target Start/End: Original strand, 28436479 - 28436560
Alignment:
Q  159 cactttatgtgggatccatttataaagcgtggtacacacatgaatttcaccaaacaagagaatgaatgttagagagagtgtt 240  Q
    ||||||||  || ||||||||  |||| ||||||  ||||||||||||||| ||  ||||| ||||||||||| ||||||||    
T  28436479 cactttatacggaatccatttcaaaagtgtggtaaccacatgaatttcacccaattagagagtgaatgttagaaagagtgtt 28436560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 68; Significance: 3e-30; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 159 - 270
Target Start/End: Original strand, 7447642 - 7447752
Alignment:
Q  159 cactttatgtgggatccatttataaagcgtggtacacacatgaatttcaccaaacaagagaatgaatgttagagagagtgttagaaaaagagtgtccata 258  Q
    ||||||||||||||||||||| ||| | ||||||| ||||||||||||||| ||||||||| || |||||||||||||||||||||| |||||||| |||    
T  7447642 cactttatgtgggatccatttctaatgtgtggtacccacatgaatttcacccaacaagagagtg-atgttagagagagtgttagaaatagagtgtcaata 7447740  T
Q  259 acactcctcttt 270  Q
     |||||||||||    
T  7447741 gcactcctcttt 7447752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 161 - 267
Target Start/End: Complemental strand, 32439579 - 32439473
Alignment:
Q  161 ctttatgtgggatccatttataaagcgtggtacacacatgaatttcaccaaacaagagaatgaatgttagagagagtgttagaaaaagagtgtccataac 260  Q
    |||||||||||||||||||  || | ||||||| ||||||||||||||| || |||||| ||| |||||||||||||||| |||| ||||||| |||| |    
T  32439579 ctttatgtgggatccatttccaatgtgtggtacccacatgaatttcacccaataagagagtgagtgttagagagagtgtttgaaagagagtgttcatagc 32439480  T
Q  261 actcctc 267  Q
    |||||||    
T  32439479 actcctc 32439473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 65; Significance: 2e-28; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 159 - 267
Target Start/End: Original strand, 33440580 - 33440688
Alignment:
Q  159 cactttatgtgggatccatttataaagcgtggtacacacatgaatttcaccaaacaagagaatgaatgttagagagagtgttagaaaaagagtgtccata 258  Q
    |||||||||||||||||||||  || | ||||||| ||||||| ||||||| || |||||| ||||||||||||||||||||| ||| ||||||||||||    
T  33440580 cactttatgtgggatccatttccaatgtgtggtacccacatgactttcacccaataagagagtgaatgttagagagagtgttataaagagagtgtccata 33440679  T
Q  259 acactcctc 267  Q
    |||||||||    
T  33440680 acactcctc 33440688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 159 - 269
Target Start/End: Complemental strand, 28700658 - 28700548
Alignment:
Q  159 cactttatgtgggatccatttataaagcgtggtacacacatgaatttcaccaaacaagagaatgaatgttagagagagtgttagaaaaagagtgtccata 258  Q
    ||||||||||||||| |||||  ||   ||||||| ||||| ||||| ||| || |||||| ||| ||||||||||||||||||||| ||||||| ||||    
T  28700658 cactttatgtgggattcatttccaatatgtggtacccacataaatttaacccaataagagagtgagtgttagagagagtgttagaaagagagtgtacata 28700559  T
Q  259 acactcctctt 269  Q
    |||||||||||    
T  28700558 acactcctctt 28700548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 197 - 269
Target Start/End: Complemental strand, 14195272 - 14195200
Alignment:
Q  197 catgaatttcaccaaacaagagaatgaatgttagagagagtgttagaaaaagagtgtccataacactcctctt 269  Q
    ||||| ||||| | || |||||||||| ||||||||||||||||||||||| |||||||||||||||||||||    
T  14195272 catgactttcatccaataagagaatgagtgttagagagagtgttagaaaaatagtgtccataacactcctctt 14195200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 159 - 269
Target Start/End: Original strand, 30085454 - 30085564
Alignment:
Q  159 cactttatgtgggatccatttataaagcgtggtacacacatgaatttcaccaaacaagagaatgaatgttagagagagtgttagaaaaagagtgtccata 258  Q
    |||||||||||||||||||||  ||   |||  || ||||||||||||||  || |||||| | | ||||||||||||||||||||| ||||||||||||    
T  30085454 cactttatgtgggatccatttccaacatgtgacactcacatgaatttcactcaataagagagtaagtgttagagagagtgttagaaagagagtgtccata 30085553  T
Q  259 acactcctctt 269  Q
    ||| |||||||    
T  30085554 acattcctctt 30085564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 159 - 233
Target Start/End: Original strand, 17017591 - 17017665
Alignment:
Q  159 cactttatgtgggatccatttataaagcgtggtacacacatgaatttcaccaaacaagagaatgaatgttagaga 233  Q
    |||||||||| | |||||||||||||| ||||||| || ||| |||||| | ||||||||| || ||||||||||    
T  17017591 cactttatgtagaatccatttataaagtgtggtactcatatggatttcatctaacaagagagtgtatgttagaga 17017665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 159 - 233
Target Start/End: Original strand, 17548028 - 17548102
Alignment:
Q  159 cactttatgtgggatccatttataaagcgtggtacacacatgaatttcaccaaacaagagaatgaatgttagaga 233  Q
    |||||||||| | |||||||||||||| ||||||| || ||| |||||| | ||||||||| || ||||||||||    
T  17548028 cactttatgtagaatccatttataaagtgtggtactcatatggatttcatctaacaagagagtgtatgttagaga 17548102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 224 - 267
Target Start/End: Original strand, 14727111 - 14727154
Alignment:
Q  224 atgttagagagagtgttagaaaaagagtgtccataacactcctc 267  Q
    |||||||||| ||||||||||| || ||||||||||||||||||    
T  14727111 atgttagagaaagtgttagaaagagggtgtccataacactcctc 14727154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 214 - 269
Target Start/End: Complemental strand, 16895291 - 16895236
Alignment:
Q  214 aagagaatgaatgttagagagagtgttagaaaaagagtgtccataacactcctctt 269  Q
    |||||| ||| ||||||||||| ||||||||||||||||| |||| |||| |||||    
T  16895291 aagagagtgagtgttagagagaatgttagaaaaagagtgttcatagcacttctctt 16895236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 159 - 236
Target Start/End: Complemental strand, 6580933 - 6580857
Alignment:
Q  159 cactttatgtgggatccatttataaagcgtggtacacacatgaatttcaccaaacaagagaatgaatgttagagagag 236  Q
    |||||||||||||||| ||||  || | ||||||| ||||||||||||||| || |||||  ||||||||||| ||||    
T  6580933 cactttatgtgggatc-atttccaatgtgtggtacccacatgaatttcacccaataagagggtgaatgttagaaagag 6580857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 63; Significance: 3e-27; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 159 - 269
Target Start/End: Complemental strand, 29235752 - 29235642
Alignment:
Q  159 cactttatgtgggatccatttataaagcgtggtacacacatgaatttcaccaaacaagagaatgaatgttagagagagtgttagaaaaagagtgtccata 258  Q
    |||||||||| |||||||||| ||| | ||||||  | ||||||||||||| || |||||| ||| ||||||||||||||||||||| ||||||||||||    
T  29235752 cactttatgttggatccatttctaatgtgtggtatcctcatgaatttcacccaataagagagtgagtgttagagagagtgttagaaagagagtgtccata 29235653  T
Q  259 acactcctctt 269  Q
    |||||||||||    
T  29235652 acactcctctt 29235642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 162 - 269
Target Start/End: Original strand, 54187008 - 54187115
Alignment:
Q  162 tttatgtgggatccatttataaagcgtggtacacacatgaatttcaccaaacaagagaatgaatgttagagagagtgttagaaaaagagtgtccataaca 261  Q
    |||||||||||||||||| ||| | ||||||| |||||||| |||||| || |||||| ||| ||||||||||||||||||||| |||||||||||| ||    
T  54187008 tttatgtgggatccatttctaatgtgtggtacccacatgaacttcacccaataagagagtgagtgttagagagagtgttagaaagagagtgtccatagca 54187107  T
Q  262 ctcctctt 269  Q
    || |||||    
T  54187108 cttctctt 54187115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 159 - 269
Target Start/End: Complemental strand, 42780775 - 42780665
Alignment:
Q  159 cactttatgtgggatccatttataaagcgtggtacacacatgaatttcaccaaacaagagaatgaatgttagagagagtgttagaaaaagagtgtccata 258  Q
    |||||||||||||||||||||   ||| |||  ||  ||||| |||||| | || |||||||||| ||||||||||||||||||||| | ||||||||||    
T  42780775 cactttatgtgggatccattttctaagtgtgagacctacatggatttcatccaataagagaatgagtgttagagagagtgttagaaagatagtgtccata 42780676  T
Q  259 acactcctctt 269  Q
     ||||||||||    
T  42780675 gcactcctctt 42780665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 159 - 268
Target Start/End: Complemental strand, 13639507 - 13639398
Alignment:
Q  159 cactttatgtgggatccatttataaagcgtggtacacacatgaatttcaccaaacaagagaatgaatgttagagagagtgttagaaaaagagtgtccata 258  Q
    ||||||||||| |||||||||  || | ||| ||| ||||||||||||| | || || ||| ||| ||||||||||||||||||||| ||||||| ||||    
T  13639507 cactttatgtgagatccatttccaatgtgtgatacccacatgaatttcatccaataaaagagtgactgttagagagagtgttagaaagagagtgttcata 13639408  T
Q  259 acactcctct 268  Q
    | ||| ||||    
T  13639407 atacttctct 13639398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 162 - 267
Target Start/End: Original strand, 48543222 - 48543327
Alignment:
Q  162 tttatgtgggatccatttataaagcgtggtacacacatgaatttcaccaaacaagagaatgaatgttagagagagtgttagaaaaagagtgtccataaca 261  Q
    |||||||||| |||||||  || |  || ||| ||||||||||||||| || |||||| ||| |||| |||||||||||||||| ||||||| |||| ||    
T  48543222 tttatgtggggtccatttccaatgtatgctacccacatgaatttcacccaataagagagtgagtgttggagagagtgttagaaagagagtgttcatagca 48543321  T
Q  262 ctcctc 267  Q
    ||||||    
T  48543322 ctcctc 48543327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 160 - 268
Target Start/End: Complemental strand, 38602912 - 38602804
Alignment:
Q  160 actttatgtgggatccatttataaagcgtggtacacacatgaatttcaccaaacaagagaatgaatgttagagagagtgttagaaaaagagtgtccataa 259  Q
    ||||||||||||||||||||  || | ||||||| ||||| ||||| ||| || || ||| ||| | ||||||||||||||||||| |||||| |||||     
T  38602912 actttatgtgggatccattttcaatgtgtggtacccacataaattttaccgaataaaagagtgagtattagagagagtgttagaaagagagtgcccatag 38602813  T
Q  260 cactcctct 268  Q
    | |||||||    
T  38602812 ccctcctct 38602804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 159 - 269
Target Start/End: Original strand, 20909369 - 20909478
Alignment:
Q  159 cactttatgtgggatccatttataaagcgtggtacacacatgaatttcaccaaacaagagaatgaatgttagagagagtgttagaaaaagagtgtccata 258  Q
    |||||||||||||||||||||  ||   ||||| | ||| ||||||||||| || |||||| | | || ||||| ||||||||||| | |||||||||||    
T  20909369 cactttatgtgggatccattttcaataggtggtgcccacctgaatttcacccaataagagagtaagtgatagagggagtgttagaaga-gagtgtccata 20909467  T
Q  259 acactcctctt 269  Q
    |||||||||||    
T  20909468 acactcctctt 20909478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 195 - 253
Target Start/End: Complemental strand, 54186996 - 54186938
Alignment:
Q  195 cacatgaatttcaccaaacaagagaatgaatgttagagagagtgttagaaaaagagtgt 253  Q
    ||||||| ||||||| || | |||| ||||||||||||||||||||||||| |||||||    
T  54186996 cacatgagtttcacccaataggagagtgaatgttagagagagtgttagaaagagagtgt 54186938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 214 - 267
Target Start/End: Complemental strand, 54140812 - 54140759
Alignment:
Q  214 aagagaatgaatgttagagagagtgttagaaaaagagtgtccataacactcctc 267  Q
    |||||| ||||||||||||| ||||||||||| ||||||||||||  |||||||    
T  54140812 aagagagtgaatgttagagaaagtgttagaaagagagtgtccatagtactcctc 54140759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 231 - 267
Target Start/End: Complemental strand, 8700236 - 8700200
Alignment:
Q  231 agagagtgttagaaaaagagtgtccataacactcctc 267  Q
    ||||||||||||||| |||||||||||||||||||||    
T  8700236 agagagtgttagaaagagagtgtccataacactcctc 8700200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 231 - 267
Target Start/End: Complemental strand, 9052123 - 9052087
Alignment:
Q  231 agagagtgttagaaaaagagtgtccataacactcctc 267  Q
    ||||||||||||||| |||||||||||||||||||||    
T  9052123 agagagtgttagaaagagagtgtccataacactcctc 9052087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 159 - 239
Target Start/End: Original strand, 46893422 - 46893502
Alignment:
Q  159 cactttatgtgggatccatttataaagcgtggtacacacatgaatttcaccaaacaagagaatgaatgttagagagagtgt 239  Q
    |||||||||||||||||||||  || | ||| ||| |||||||||||||   || |||||| ||| |||||||||||||||    
T  46893422 cactttatgtgggatccatttccaatgtgtgttacccacatgaatttcatttaataagagagtgagtgttagagagagtgt 46893502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 57; Significance: 1e-23; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 159 - 267
Target Start/End: Complemental strand, 19079016 - 19078908
Alignment:
Q  159 cactttatgtgggatccatttataaagcgtggtacacacatgaatttcaccaaacaagagaatgaatgttagagagagtgttagaaaaagagtgtccata 258  Q
    |||||||||||||||||||||  || | ||||||| | ||||| ||||||| || |||||| ||| ||||||||||||||||||||| ||||||||||||    
T  19079016 cactttatgtgggatccatttccaatgtgtggtacccgcatgactttcacccaataagagagtgagtgttagagagagtgttagaaacagagtgtccata 19078917  T
Q  259 acactcctc 267  Q
     ||||||||    
T  19078916 gcactcctc 19078908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 159 - 267
Target Start/End: Complemental strand, 19126904 - 19126796
Alignment:
Q  159 cactttatgtgggatccatttataaagcgtggtacacacatgaatttcaccaaacaagagaatgaatgttagagagagtgttagaaaaagagtgtccata 258  Q
    |||||||||||||||||||||  || | ||||||| | ||||| ||||||| || |||||| ||| ||||||||||||||||||||| ||||||||||||    
T  19126904 cactttatgtgggatccatttccaatgtgtggtacccgcatgactttcacccaataagagagtgagtgttagagagagtgttagaaacagagtgtccata 19126805  T
Q  259 acactcctc 267  Q
     ||||||||    
T  19126804 gcactcctc 19126796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 161 - 267
Target Start/End: Complemental strand, 24886140 - 24886034
Alignment:
Q  161 ctttatgtgggatccatttataaagcgtggtacacacatgaatttcaccaaacaagagaatgaatgttagagagagtgttagaaaaagagtgtccataac 260  Q
    |||||||||||||| ||||| || | ||||||| ||||||||||||||| || || ||| ||| ||||||||||||||||||||| ||| |||||||| |    
T  24886140 ctttatgtgggatctatttacaatgtgtggtacccacatgaatttcacccaataaaagagtgagtgttagagagagtgttagaaagagaatgtccatagc 24886041  T
Q  261 actcctc 267  Q
    |||||||    
T  24886040 actcctc 24886034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 162 - 273
Target Start/End: Complemental strand, 29068180 - 29068069
Alignment:
Q  162 tttatgtgggatccatttataaagcgtggtacacacatgaatttcaccaaacaagagaatgaatgttagagagagtgttagaaaaagagtgtccataaca 261  Q
    ||||||||||||| ||||  || | ||||||| |||| | |||||||| || || | | ||| ||||||||| ||||||||||| |||||||||||||||    
T  29068180 tttatgtgggatcaatttccaatgtgtggtacccacacgtatttcacccaataaaatagtgagtgttagagaaagtgttagaaagagagtgtccataaca 29068081  T
Q  262 ctcctctttatt 273  Q
    ||||||||||||    
T  29068080 ctcctctttatt 29068069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 159 - 270
Target Start/End: Original strand, 52444453 - 52444563
Alignment:
Q  159 cactttatgtgggatccatttataaagcgtggtacacacatgaatttcaccaaacaagagaatgaatgttagagagagtgttagaaaaagagtgtccata 258  Q
    |||||| ||||||||||||||  |||| ||||||| |||||  ||| |||| || ||||||  ||||||||||||| |||||||||| ||||||||||||    
T  52444453 cactttctgtgggatccatttcgaaagtgtggtacccacatagatt-cacccaataagagagggaatgttagagagggtgttagaaagagagtgtccata 52444551  T
Q  259 acactcctcttt 270  Q
     |||||||||||    
T  52444552 gcactcctcttt 52444563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 159 - 269
Target Start/End: Complemental strand, 31602164 - 31602056
Alignment:
Q  159 cactttatgtgggatccatttataaagcgtggtacacacatgaatttcaccaaacaagagaatgaatgttagagagagtgttagaaaaagagtgtccata 258  Q
    ||||||| |||||||||||||  |||| |||  || ||||||| ||||| | || |||||||||| ||||||||||||||||   |||||||||||||||    
T  31602164 cactttaggtgggatccatttccaaagtgtgagacccacatgagtttcatccaataagagaatgagtgttagagagagtgtt--gaaaagagtgtccata 31602067  T
Q  259 acactcctctt 269  Q
     ||||||||||    
T  31602066 gcactcctctt 31602056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 161 - 239
Target Start/End: Original strand, 11709656 - 11709734
Alignment:
Q  161 ctttatgtgggatccatttataaagcgtggtacacacatgaatttcaccaaacaagagaatgaatgttagagagagtgt 239  Q
    |||||||||||||||||||  || | ||||||| ||||||||||||||  || |||||| ||| |||||||||||||||    
T  11709656 ctttatgtgggatccatttccaatgtgtggtacccacatgaatttcactcaataagagagtgagtgttagagagagtgt 11709734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 159 - 263
Target Start/End: Complemental strand, 17642456 - 17642352
Alignment:
Q  159 cactttatgtgggatccatttataaagcgtggtacacacatgaatttcaccaaacaagagaatgaatgttagagagagtgttagaaaaagagtgtccata 258  Q
    ||||||||||  ||||||||| ||| | ||||||| |||||| |||||| | || |||| ||||| ||| | ||| | | ||||||| ||| ||||||||    
T  17642456 cactttatgtatgatccatttctaatgtgtggtacccacatgtatttcagctaataagaaaatgagtgtcatagaaaatattagaaagagaatgtccata 17642357  T
Q  259 acact 263  Q
    |||||    
T  17642356 acact 17642352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 55; Significance: 2e-22; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 187 - 269
Target Start/End: Original strand, 43930063 - 43930145
Alignment:
Q  187 gtggtacacacatgaatttcaccaaacaagagaatgaatgttagagagagtgttagaaaaagagtgtccataacactcctctt 269  Q
    ||||||| ||||||||||||||| || || ||| ||| ||||||||||||||||||||| |||||||||||||||||||||||    
T  43930063 gtggtacccacatgaatttcacccaataaaagagtgagtgttagagagagtgttagaaagagagtgtccataacactcctctt 43930145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 187 - 270
Target Start/End: Complemental strand, 36738529 - 36738446
Alignment:
Q  187 gtggtacacacatgaatttcaccaaacaagagaatgaatgttagagagagtgttagaaaaagagtgtccataacactcctcttt 270  Q
    ||||||| | ||||||||||||  || |||||| ||||||||||||| |||||||||||||||||||||| |||||||||||||    
T  36738529 gtggtacccgcatgaatttcactcaataagagagtgaatgttagagaaagtgttagaaaaagagtgtccacaacactcctcttt 36738446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 159 - 264
Target Start/End: Complemental strand, 17878785 - 17878680
Alignment:
Q  159 cactttatgtgggatccatttataaagcgtggtacacacatgaatttcaccaaacaagagaatgaatgttagagagagtgttagaaaaagagtgtccata 258  Q
    |||||||||||||||| |||| ||| | ||| ||| ||||||| ||||||| || |||||| | ||||||| ||||||||||||||| ||||||||||||    
T  17878785 cactttatgtgggatctatttctaatgtgtgatacccacatgactttcacccaataagagagtaaatgttaaagagagtgttagaaagagagtgtccata 17878686  T
Q  259 acactc 264  Q
     |||||    
T  17878685 gcactc 17878680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 159 - 269
Target Start/End: Original strand, 41873512 - 41873622
Alignment:
Q  159 cactttatgtgggatccatttataaagcgtggtacacacatgaatttcaccaaacaagagaatgaatgttagagagagtgttagaaaaagagtgtccata 258  Q
    ||||||||||||| ||||||| ||| | ||||||| |||||||| |||||| || || ||| |||   ||||||||||| ||||||| ||||||||||||    
T  41873512 cactttatgtgggttccatttctaatgtgtggtacccacatgaacttcacccaataaaagagtgagaattagagagagtattagaaagagagtgtccata 41873611  T
Q  259 acactcctctt 269  Q
     ||||||||||    
T  41873612 gcactcctctt 41873622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 159 - 253
Target Start/End: Complemental strand, 47822084 - 47821990
Alignment:
Q  159 cactttatgtgggatccatttataaagcgtggtacacacatgaatttcaccaaacaagagaatgaatgttagagagagtgttagaaaaagagtgt 253  Q
    |||||||||||||||||||||  || | ||||||| |||||| |||||||| || |  ||| ||| |||||||||||||| |||||| |||||||    
T  47822084 cactttatgtgggatccatttccaatgtgtggtacccacatggatttcacccaatataagagtgagtgttagagagagtgctagaaagagagtgt 47821990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 159 - 236
Target Start/End: Original strand, 557453 - 557530
Alignment:
Q  159 cactttatgtgggatccatttataaagcgtggtacacacatgaatttcaccaaacaagagaatgaatgttagagagag 236  Q
    ||||||||||||||||||||| ||| | ||| ||| ||||||||||||| | || |||||| ||| ||||||| ||||    
T  557453 cactttatgtgggatccatttttaatgtgtgatacccacatgaatttcatccaataagagagtgagtgttagaaagag 557530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 159 - 267
Target Start/End: Original strand, 46947838 - 46947945
Alignment:
Q  159 cactttatgtgggatccatttataaagcgtggtacacacatgaatttcaccaaacaagagaatgaatgttagagagagtgttagaaaaagagtgtccata 258  Q
    ||||||||| ||||| |||||  |||| |||| || ||||||| |||||||  | |||||| ||| | ||| ||||||| ||||||| ||||||||||||    
T  46947838 cactttatgcgggatgcattttcaaagtgtggaac-cacatgagtttcaccctataagagagtgagtattatagagagtcttagaaagagagtgtccata 46947936  T
Q  259 acactcctc 267  Q
     ||||||||    
T  46947937 gcactcctc 46947945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 162 - 267
Target Start/End: Original strand, 31699558 - 31699663
Alignment:
Q  162 tttatgtgggatccatttataaagcgtggtacacacatgaatttcaccaaacaagagaatgaatgttagagagagtgttagaaaaagagtgtccataaca 261  Q
    |||||||||| |||||||  || |  || ||| ||||||||||||||| || |||||| ||| |||| |||||||||||||||| |||||||||||| ||    
T  31699558 tttatgtggggtccatttccaatgtatgatacccacatgaatttcacccaataagagagtgagtgttggagagagtgttagaaagagagtgtccatagca 31699657  T
Q  262 ctcctc 267  Q
    | ||||    
T  31699658 cccctc 31699663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 202 - 267
Target Start/End: Complemental strand, 6540285 - 6540220
Alignment:
Q  202 atttcaccaaacaagagaatgaatgttagagagagtgttagaaaaagagtgtccataacactcctc 267  Q
    |||||||| || |||||| || |||||| | ||||||||| ||| |||||||||||||||||||||    
T  6540285 atttcacccaataagagagtggatgttacaaagagtgttaaaaagagagtgtccataacactcctc 6540220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 159 - 236
Target Start/End: Complemental strand, 43480347 - 43480270
Alignment:
Q  159 cactttatgtgggatccatttataaagcgtggtacacacatgaatttcaccaaacaagagaatgaatgttagagagag 236  Q
    |||||||||||||||||||||  || | ||||||| ||||||||||||| | || |||| | ||| ||||||||||||    
T  43480347 cactttatgtgggatccattttcaatgtgtggtacccacatgaatttcagccaataagaaagtgagtgttagagagag 43480270  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 225 - 268
Target Start/End: Original strand, 16650597 - 16650640
Alignment:
Q  225 tgttagagagagtgttagaaaaagagtgtccataacactcctct 268  Q
    |||||| |||||||||||||| |||||||| |||||||||||||    
T  16650597 tgttagggagagtgttagaaagagagtgtctataacactcctct 16650640  T

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Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 159 - 234
Target Start/End: Original strand, 51475240 - 51475315
Alignment:
Q  159 cactttatgtgggatccatttataaagcgtggtacacacatgaatttcaccaaacaagagaatgaatgttagagag 234  Q
    |||||||||||||||||||||  || | ||||||| |||||| |||||||| || |||||| ||  ||||||||||    
T  51475240 cactttatgtgggatccatttccaatgtgtggtacccacatggatttcacccaataagagagtgggtgttagagag 51475315  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 159 - 231
Target Start/End: Original strand, 37306482 - 37306554
Alignment:
Q  159 cactttatgtgggatccatttataaagcgtggtacacacatgaatttcaccaaacaagagaatgaatgttaga 231  Q
    ||||||||||| |||||||||  || | ||||||| ||||||||||||||| || |||| | ||| |||||||    
T  37306482 cactttatgtgagatccatttccaatgtgtggtacccacatgaatttcacccaataagaaagtgagtgttaga 37306554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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