View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13046_low_3 (Length: 339)
Name: NF13046_low_3
Description: NF13046
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13046_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 297; Significance: 1e-167; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 2 - 334
Target Start/End: Original strand, 40001713 - 40002044
Alignment:
| Q |
2 |
gcacagagagagatagaatgttggtttttgaagatttttaaaatggataattataggcacttgttgtgttaggtgagtttcgattttattatttttatac |
101 |
Q |
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| T |
40001713 |
gcacagagagagatagaatgttggtttttgaagatttttaaa-tggataattataggcacttgttgggttaggtgagtttcgattttattatttttatac |
40001811 |
T |
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| Q |
102 |
aagtataaatttatatatgaatgtgttatatggtgacatgttttgtgtgctaaaaggacaatgaagcatattaatttagttaatatgagttttgactggg |
201 |
Q |
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| T |
40001812 |
aagtataaatttatatatgaatgtgttatatggtgacatgttttgtgtgctaaaaaaacaatgaagcatattaatttagttaatatgagttttgactggg |
40001911 |
T |
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| Q |
202 |
ctagcagggcaaggcgcatgccaatgaaaccaatccgaatgctgttccaaggaagaagttgcccaagttagttatttttaggacaatttgactttttatt |
301 |
Q |
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| T |
40001912 |
ctagcagggcaatgcgcatgccaatgaaaccaatccgaatgctgttctaaggaagaagttgcccaagttagttatttttaggacaatttgactttttatt |
40002011 |
T |
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| Q |
302 |
tggtctatctgtaaatgacatattgatgatgtc |
334 |
Q |
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| T |
40002012 |
tggtctatctgtaaatgacatatttgtgatgtc |
40002044 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 265 - 315
Target Start/End: Original strand, 43104966 - 43105016
Alignment:
| Q |
265 |
caagttagttatttttaggacaatttgactttttatttggtctatctgtaa |
315 |
Q |
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| T |
43104966 |
caagttagttatttttaggactatttgactttttatttggactatctgtaa |
43105016 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 129 - 222
Target Start/End: Original strand, 43104824 - 43104918
Alignment:
| Q |
129 |
atatggtgacatgttttgtgtgctaa-aaggacaatgaagcatattaatttagttaatatgagttttgactgggctagcagggcaaggcgcatgc |
222 |
Q |
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| T |
43104824 |
atatgatgacatgttttgtgtgccaagaagaacaatgtaacacattaatttagttaatataagtttcgactgagctagtagggcatggtgcatgc |
43104918 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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