View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13046_low_4 (Length: 332)

Name: NF13046_low_4
Description: NF13046
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13046_low_4
NF13046_low_4
[»] chr3 (3 HSPs)
chr3 (1-308)||(2821553-2821860)
chr3 (41-126)||(48196786-48196871)
chr3 (9-99)||(46574483-46574573)
[»] chr1 (2 HSPs)
chr1 (41-126)||(23539739-23539823)
chr1 (42-171)||(40569674-40569804)
[»] chr5 (2 HSPs)
chr5 (41-126)||(16397967-16398052)
chr5 (166-280)||(7379937-7380048)
[»] chr8 (1 HSPs)
chr8 (8-86)||(10723775-10723853)
[»] chr2 (1 HSPs)
chr2 (166-270)||(15999232-15999333)
[»] scaffold0018 (1 HSPs)
scaffold0018 (71-168)||(32103-32200)
[»] chr4 (1 HSPs)
chr4 (130-207)||(42286518-42286593)


Alignment Details
Target: chr3 (Bit Score: 280; Significance: 1e-157; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 1 - 308
Target Start/End: Complemental strand, 2821860 - 2821553
Alignment:
Q  1 aagacctttgttgaagttgtggaattttaaagaaaataatgagagaaaataataagaaccttgaatgttattgatactgacttgattgtagtttgatacc 100  Q
    |||||||||||||||||||||| |||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2821860 aagacctttgttgaagttgtgggattttaaagataagaatgagagaaaataataagaaccttgaatgttattgatactgacttgattgtagtttgatacc 2821761  T
Q  101 aaaggctaaacacaaatccctatttacagggatagacaaattcaaccttaaatcaagaacaaatcataatattaagatatataaactctaatcctaagag 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2821760 aaaggctaaacacaaatccctatttacagggatagacaaattcaaccttaaatcaagaacaaatcataatattaagatatataaactctaatcctaagag 2821661  T
Q  201 atactcttataaggttataaactaatcacaggaaataacttccgatactctaatacaatattaaagatatcataagatatattctatgattcttacactt 300  Q
    || |||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  2821660 atgctcttataaggttataaactaattgcaggaaataacttccgatactctaatacaatattaaagatattataagatatattctatgattcttacactt 2821561  T
Q  301 cctttttc 308  Q
    ||||||||    
T  2821560 cctttttc 2821553  T

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Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 41 - 126
Target Start/End: Complemental strand, 48196871 - 48196786
Alignment:
Q  41 gagagaaaataataagaaccttgaatgttattgatactgacttgattgtagtttgataccaaaggctaaacacaaatccctattta 126  Q
    ||||||||||||||||||||| |||| ||||| ||| ||||| ||| |||| ||||||| |||| |||||| | ||||||| ||||    
T  48196871 gagagaaaataataagaacctggaatattatttatattgactcgatagtaggttgatacaaaagactaaaccctaatccctgttta 48196786  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 9 - 99
Target Start/End: Complemental strand, 46574573 - 46574483
Alignment:
Q  9 tgttgaagttgtggaattttaaagaaaataatgagagaaaataataagaaccttgaatgttattgatactgacttgattgtagtttgatac 99  Q
    |||||||||||||  | |||| | |||| ||| |||||  ||||||||||||||||||  ||||||||||||||  || ||| ||||||||    
T  46574573 tgttgaagttgtgagaatttagataaaagaataagagatgataataagaaccttgaatagtattgatactgactgaatagtactttgatac 46574483  T

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Target: chr1 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 41 - 126
Target Start/End: Complemental strand, 23539823 - 23539739
Alignment:
Q  41 gagagaaaataataagaaccttgaatgttattgatactgacttgattgtagtttgataccaaaggctaaacacaaatccctattta 126  Q
    ||||||||||||||||| | |||||| ||||||||| ||||||||| |||| ||||| | ||||||||||| | ||||||||||||    
T  23539823 gagagaaaataataagacctttgaatattattgata-tgacttgatagtagcttgatccaaaaggctaaaccctaatccctattta 23539739  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 42 - 171
Target Start/End: Complemental strand, 40569804 - 40569674
Alignment:
Q  42 agagaaaataataagaaccttg-aatgttattgatactgacttgattgtagtttgataccaaaggctaaacacaaatccctatttacagggatagacaaa 140  Q
    |||||||||||||||||||| | |||||||||||||||| ||  || |||| ||||||| |||  || ||  | |||||||||||| || |||| ||  |    
T  40569804 agagaaaataataagaacctcggaatgttattgatactggctgaatagtagcttgatacaaaaaactcaattctaatccctatttatagcgatacacgga 40569705  T
Q  141 ttcaaccttaaatcaagaacaaatcataata 171  Q
     |||| | |||||||||||||||||| ||||    
T  40569704 ctcaatcctaaatcaagaacaaatcaaaata 40569674  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 41 - 126
Target Start/End: Original strand, 16397967 - 16398052
Alignment:
Q  41 gagagaaaataataagaaccttgaatgttattgatactgacttgattgtagtttgataccaaaggctaaacacaaatccctattta 126  Q
    ||||||||||||||| |||||||||| || |||||||| | |  || |||| ||||| |||||| ||||| || ||||||||||||    
T  16397967 gagagaaaataataaaaaccttgaatattgttgatactaattgaatagtagcttgatcccaaagactaaatactaatccctattta 16398052  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 166 - 280
Target Start/End: Complemental strand, 7380048 - 7379937
Alignment:
Q  166 ataatattaagatatataaactctaatcctaagagatactcttataaggttataaactaatcacaggaaataacttccgatactctaatacaatattaaa 265  Q
    |||||| ||||  ||||||| | |||||| || |||||||||   ||| || |||||||||   ||||||||||||  |||| ||||||| |||||||||    
T  7380048 ataataataagtaatataaaatttaatcccaatagatactct---aagattgtaaactaattctaggaaataacttaagatattctaatataatattaaa 7379952  T
Q  266 gatatcataagatat 280  Q
    | ||| |||||||||    
T  7379951 gttattataagatat 7379937  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 8 - 86
Target Start/End: Original strand, 10723775 - 10723853
Alignment:
Q  8 ttgttgaagttgtggaattttaaagaaaataatgagagaaaataataagaaccttgaatgttattgatactgacttgat 86  Q
    |||||||| ||||| ||||||| | |||   | ||||||||||||||||||| |||||| ||||||||| | |||||||    
T  10723775 ttgttgaaattgtgcaattttagataaatggacgagagaaaataataagaactttgaatattattgataataacttgat 10723853  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 166 - 270
Target Start/End: Original strand, 15999232 - 15999333
Alignment:
Q  166 ataatattaagatatataaactctaatcctaagagatactcttataaggttataaactaatcacaggaaataacttccgatactctaatacaatattaaa 265  Q
    |||||| ||||  ||||||| || |||||||||||||||||   |||| |||||||||||||| | || |||||||  |||||| ||||| |||||  ||    
T  15999232 ataataataagtaatataaaatcaaatcctaagagatactc---taagattataaactaatcatatgacataacttaagatactttaatataatatcgaa 15999328  T
Q  266 gatat 270  Q
    |||||    
T  15999329 gatat 15999333  T

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Target: scaffold0018 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 71 - 168
Target Start/End: Complemental strand, 32200 - 32103
Alignment:
Q  71 ttgatactgacttgattgtagtttgataccaaaggctaaacacaaatccctatttacagggatagacaaattcaaccttaaatcaagaacaaatcata 168  Q
    |||||| ||||||||| |||| ||||||| |||  || || || |||||||||||| ||||||| | | | |||| | | ||||||||||||||||||    
T  32200 ttgataatgacttgatagtaggttgatacaaaaaactgaatactaatccctatttatagggatacatagactcaatcatgaatcaagaacaaatcata 32103  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 130 - 207
Target Start/End: Original strand, 42286518 - 42286593
Alignment:
Q  130 ggatagacaaattcaaccttaaatcaagaacaaatcataatattaagatatataaactctaatcctaagagatactct 207  Q
    ||||| ||||| |||| |||||||||||| ||||||| |||| ||| | || |||||||| |||||||||||||||||    
T  42286518 ggatacacaaactcaatcttaaatcaagaccaaatcaaaataataaca-at-taaactctgatcctaagagatactct 42286593  T

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