View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13046_low_7 (Length: 264)
Name: NF13046_low_7
Description: NF13046
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13046_low_7 |
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Alignment Details
Target: chr8 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 1 - 255
Target Start/End: Original strand, 40001456 - 40001710
Alignment:
| Q |
1 |
ttcgataatcaattttctctccataatcatcaactcttgaatgagaagcttgttctccatggtaggtgtagtacccttgatcgatttcatggtaaaaatc |
100 |
Q |
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| T |
40001456 |
ttcgataatcaattttctctccataatcatcaactcttgaatgagaagctggttctccatggtaggtgtagtacccttgatcgatttcatggtaaaaatc |
40001555 |
T |
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| Q |
101 |
gttgttacgtagagcacatcctgatgaaagacatttatattttctgcgactttttgtttttcttattactctgaaaatcataggcagaagaccctccata |
200 |
Q |
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| T |
40001556 |
gttgttacgtagagcacatcctgatgaaagacatttatattttctgcgactttttgtttttcttattactctgaaaatcataggcagaagaccctccata |
40001655 |
T |
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| Q |
201 |
atatgtatcacaattcacaaccttaattccttcctttttgttcttgaagaataat |
255 |
Q |
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| T |
40001656 |
atatgtatcacaattcacaaccttaattccttcctttttgttcttgaagaataat |
40001710 |
T |
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Back To:
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Target: chr5 (Bit Score: 52; Significance: 7e-21; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 43103359 - 43103438
Alignment:
| Q |
1 |
ttcgataatcaattttctctccataatcatcaactcttgaatgagaagcttgttctccatggtaggtgtagtacccttga |
80 |
Q |
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| T |
43103359 |
ttcgataatcaattttgtctgcataatcatcaacccttgaattagaagattgttctccatggtagttgtagtgcccttga |
43103438 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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