View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13047_high_2 (Length: 538)
Name: NF13047_high_2
Description: NF13047
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13047_high_2 |
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| [»] scaffold0119 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 430; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 430; E-Value: 0
Query Start/End: Original strand, 23 - 513
Target Start/End: Complemental strand, 1301786 - 1301301
Alignment:
| Q |
23 |
atgctcccatattcctttggtataccttgaaccggaaaggatacagaggctttcagaaagaagtgcagaaatgcttgtggaatgcacactacttcaaaga |
122 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
1301786 |
atgctcccatattcctttggtataccttgaaccggaaaggatacagaggctttcagaaagaagtgcagaaatgcttgcggaatgcacactacttcaaaga |
1301687 |
T |
|
| Q |
123 |
ccgccttatcgaggctgggattggtgcaatgcttaatgagcttagcagcacggttgtatttgagcgaccacatgcatgatgaagaatttatacgcaagtg |
222 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
1301686 |
ccgccttatcgaggctgggattggtgcaatgcttaatgagcttagcagcacggttgtatttgagcgaccacatg----atgaagaatttatacgcaagtg |
1301591 |
T |
|
| Q |
223 |
gcagttagcatgcaaggggaacatcgctcatgtggtggtgatgccaaacgtcactattgagaagcttgatgattttctaaacgagcttgtgcagaagcgt |
322 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1301590 |
gcagttagcatgcaaggggaacatcgctcatgtggtggtgatgccaaacgtcactattgagaagcttgatgattttctaaacgagcttgtgcagaagcgt |
1301491 |
T |
|
| Q |
323 |
gctacctggtttgaaaatggtacatttcaaacgtattgcatagcatcagatgtaggtgaaaacagttgcctatgctgctcctcataagtaattgtagcat |
422 |
Q |
| |
|
||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||| |
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| T |
1301490 |
gctacctggtttgaagatggtacatttcaaccgtattgcatagcatcagatgtaggtgaaaacagttgcctatg-tgctcagcataagtaattgtagcat |
1301392 |
T |
|
| Q |
423 |
ctaatagaacctagagtttacaacggtagttgtttgtttcgagttttttatgtgctgtgttttatcagcactttcatgcacttatataaga |
513 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| | |||||||| ||||||| |
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| T |
1301391 |
ctaatagaacctagagtttacaacggtagttgtttgtttcgagttttttatgtggtgtgttttatcagcactgtgatgcacttgtataaga |
1301301 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 72 - 473
Target Start/End: Original strand, 1291144 - 1291545
Alignment:
| Q |
72 |
ctttcagaaagaagtgcagaaatgcttgtggaatgcacactacttcaaagaccgccttatcgaggctgggattggtgcaatgcttaatgagcttagcagc |
171 |
Q |
| |
|
|||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1291144 |
ctttgagaaagaagtgcagaaatgcttgcggaatgcacactacttcaaagaccgccttatcgaggctgggattggtgcaatgcttaatgagcttagcagc |
1291243 |
T |
|
| Q |
172 |
acggttgtatttgagcgaccacatgcatgatgaagaatttatacgcaagtggcagttagcatgcaaggggaacatcgctcatgtggtggtgatgccaaac |
271 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1291244 |
acggttgtatttgagcgaccacatg----atgaagaatttatacgcaagtggcagttagcatgcaaggggaacatcgctcatgtggtggtgatgccaaac |
1291339 |
T |
|
| Q |
272 |
gtcactattgagaagcttgatgattttctaaacgagcttgtgcagaagcgtgctacctggtttgaaaatggtacatttcaaacgtattgcatagcatcag |
371 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||| |
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| T |
1291340 |
gtcactattgagaagcttgatgattttctaaacgagcttgtgcagaagcgtgctacctggtttgaatatggtacatttcaaccgtattgcatagcatcag |
1291439 |
T |
|
| Q |
372 |
atgtaggtgaaaacagttgcctatgct----gctcctcataagtaattgtagcatctaatagaacctagagtttacaacggtagttgtttgtttcgagtt |
467 |
Q |
| |
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||||||||||||||||||||||| || |||| ||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
1291440 |
atgtaggtgaaaacagttgcctagcctatgtgctcatcataagtaattggagcatctaattgaacctagagtttacaacggtagttgtttgtttcgagtt |
1291539 |
T |
|
| Q |
468 |
ttttat |
473 |
Q |
| |
|
|||||| |
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|
| T |
1291540 |
ttttat |
1291545 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 421; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 421; E-Value: 0
Query Start/End: Original strand, 23 - 513
Target Start/End: Complemental strand, 26672444 - 26671955
Alignment:
| Q |
23 |
atgctcccatattcctttggtataccttgaaccggaaaggatacagaggctttcagaaagaagtgcagaaatgcttgtggaatgcacactacttcaaaga |
122 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||| |
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| T |
26672444 |
atgctcccatattcctttggtataccttgaaccggaaaggatacagaggctttcagaaagaagtgcagaaatgcttgcggaatgcatactacttcaaaga |
26672345 |
T |
|
| Q |
123 |
ccgccttatcgaggctgggattggtgcaatgcttaatgagcttagcagcacggttgtatttgagcgaccacatgcatgatgaagaatttatacgcaagtg |
222 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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|
| T |
26672344 |
ccgccttatcgaggctgggattggtgcaatgcttaatgagcttagcagcacggttgtatttgagcgaccacatg----atgaagaatttatacgcaagtg |
26672249 |
T |
|
| Q |
223 |
gcagttagcatgcaaggggaacatcgctcatgtggtggtgatgccaaacgtcactattgagaagcttgatgattttctaaacgagcttgtgcagaagcgt |
322 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
26672248 |
gcagttagcatgcaaggggaacatcgctcatgtggtggtgatgccaaacgtcactattgagaagcttgatgattttctaaacgagcttgtgcagaagcgt |
26672149 |
T |
|
| Q |
323 |
gctacctggtttgaaaatggtacatttcaaacgtattgcatagcatcagatgtaggtgaaaacagttgcctatgctgctcctcataagtaattgtagcat |
422 |
Q |
| |
|
||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||| |
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| T |
26672148 |
gctacctggtttgaagatggtacatttcaaccgtattgcatagcatcagatgtaggtgaaaacagttgcctatg-tgctcagcataagtaattgtagcat |
26672050 |
T |
|
| Q |
423 |
ctaatagaac----ctagagtttacaacggtagttgtttgtttcgagttttttatgtgctgtgttttatcagcactttcatgcacttatataaga |
513 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||| |
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|
| T |
26672049 |
ctaatagaacctagctagagtttacaacggtagttgtttgtttcgagttttttatgtgctgtgttttatcagcactgtgatgcacttatataaga |
26671955 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 421; E-Value: 0
Query Start/End: Original strand, 23 - 513
Target Start/End: Complemental strand, 26674972 - 26674483
Alignment:
| Q |
23 |
atgctcccatattcctttggtataccttgaaccggaaaggatacagaggctttcagaaagaagtgcagaaatgcttgtggaatgcacactacttcaaaga |
122 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||| |
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|
| T |
26674972 |
atgctcccatattcctttggtataccttgaaccggaaaggatacagaggctttcagaaagaagtgcagaaatgcttgcggaatgcatactacttcaaaga |
26674873 |
T |
|
| Q |
123 |
ccgccttatcgaggctgggattggtgcaatgcttaatgagcttagcagcacggttgtatttgagcgaccacatgcatgatgaagaatttatacgcaagtg |
222 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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|
| T |
26674872 |
ccgccttatcgaggctgggattggtgcaatgcttaatgagcttagcagcacggttgtatttgagcgaccacatg----atgaagaatttatacgcaagtg |
26674777 |
T |
|
| Q |
223 |
gcagttagcatgcaaggggaacatcgctcatgtggtggtgatgccaaacgtcactattgagaagcttgatgattttctaaacgagcttgtgcagaagcgt |
322 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26674776 |
gcagttagcatgcaaggggaacatcgctcatgtggtggtgatgccaaacgtcactattgagaagcttgatgattttctaaacgagcttgtgcagaagcgt |
26674677 |
T |
|
| Q |
323 |
gctacctggtttgaaaatggtacatttcaaacgtattgcatagcatcagatgtaggtgaaaacagttgcctatgctgctcctcataagtaattgtagcat |
422 |
Q |
| |
|
||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||| |
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|
| T |
26674676 |
gctacctggtttgaagatggtacatttcaaccgtattgcatagcatcagatgtaggtgaaaacagttgcctatg-tgctcagcataagtaattgtagcat |
26674578 |
T |
|
| Q |
423 |
ctaatagaac----ctagagtttacaacggtagttgtttgtttcgagttttttatgtgctgtgttttatcagcactttcatgcacttatataaga |
513 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||| |
|
|
| T |
26674577 |
ctaatagaacctagctagagtttacaacggtagttgtttgtttcgagttttttatgtgctgtgttttatcagcactgtgatgcacttatataaga |
26674483 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0119 (Bit Score: 64; Significance: 1e-27; HSPs: 1)
Name: scaffold0119
Description:
Target: scaffold0119; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 325 - 396
Target Start/End: Complemental strand, 20872 - 20801
Alignment:
| Q |
325 |
tacctggtttgaaaatggtacatttcaaacgtattgcatagcatcagatgtaggtgaaaacagttgcctatg |
396 |
Q |
| |
|
||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20872 |
tacctggtttgaagatggtacatttcaaccgtattgcatagcatcagatgtaggtgaaaacagttgcctatg |
20801 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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