View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13048_high_3 (Length: 488)

Name: NF13048_high_3
Description: NF13048
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13048_high_3
NF13048_high_3
[»] chr4 (1 HSPs)
chr4 (19-488)||(42448394-42448869)


Alignment Details
Target: chr4 (Bit Score: 352; Significance: 0; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 19 - 488
Target Start/End: Original strand, 42448394 - 42448869
Alignment:
Q  19 gtagttcagttgatccgatcagatcacattctttccttcaannnnnnnn--accaaccatagtgtaaaaattcataaattttaccaaacaagcatagtgt 116  Q
    |||||||||||||||||||||||||| ||||||||||||||          |||||||||||||||||||||||||||||||||||||||||||||||||    
T  42448394 gtagttcagttgatccgatcagatcatattctttccttcaaatttttttgtaccaaccatagtgtaaaaattcataaattttaccaaacaagcatagtgt 42448493  T
Q  117 aaaaattaattttagatggaaaatagagagacaaaattgtattgaaaccttttattttatttctctgttgaaaaattcttatggataagctcgtttannn 216  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       
T  42448494 aaaaattaattttagatggaaaatagagagacaaaattgtattgaaaccttttattttatttctctgttgaaaaattcttatggataagctcgtttattt 42448593  T
Q  217 nnnnnnnnnnnnn----cctctaagttatgttgtctgttatagctttgcctatactgccgctagaaatttacgagggaagggatacgtggggaccaacgc 312  Q
                     |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42448594 tttttcttttcttttttcctctaagttatattgtctgttatagctttgcctatactgccgctagaaatttacgagggaagggatacgtggggaccaacgc 42448693  T
Q  313 tagaaaaatgacttccgaaacgaatctcagttgaaaaaacccgttgtcatcagggtttcagattactttgctcaatacaatatattttcacatttgcatt 412  Q
    |||||||||||||||||||||| || |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  42448694 tagaaaaatgacttccgaaacggatatcagttgaaaaaacccgttgtcattagggtttcagattactttgctcaatacaatatattttcacatttgcatt 42448793  T
Q  413 tcatatttctctcaatctcattcccctctagttgcaggaatccaccatcggtctcggagatggaaaaatcagtgtt 488  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  42448794 tcatatttctctcaatctcattcccctctagttgcaggaatccaccatcggactcggagatggaaaaatcagtgtt 42448869  T

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