View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13048_high_4 (Length: 465)
Name: NF13048_high_4
Description: NF13048
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13048_high_4 |
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Alignment Details
Target: chr3 (Bit Score: 388; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 15 - 447
Target Start/End: Complemental strand, 3629589 - 3629157
Alignment:
| Q |
15 |
cacagaatctattccaacaatggccaaactcaccaccacttcaaatttcctcaaatcacttcactctttctccttcctcagattcacttctcctttctcc |
114 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3629589 |
cacataatctattccaacaatggccaaactcaccaccacttcaaatttcctcaaatcacttcactctttctccttcctcagattcacttctcctttctcc |
3629490 |
T |
|
| Q |
115 |
tttccaggtacacactttacttagcatttccccttataaatcacaacactaacaaaaacactcagctatcatattcnnnnnnncaggtaaacatcattct |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
3629489 |
tttccaggtacacactttacttagcatttccccttataaatcacaacactaacaaaaacactcagctatcatattctttttttcaggtaaacatcattct |
3629390 |
T |
|
| Q |
215 |
caacacacgttggcaacagaactagcttcattaatcgaagaaccctcttcttcacccacccctaaacccgaaacccgtatgcaactcaaacgctttcttg |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
3629389 |
caacacacgttggcaacagaactagcttcattaatcgaagaaccctcttcttcacccacccctaaacccgaaacccgtatgcaactcaaacggtttcttg |
3629290 |
T |
|
| Q |
315 |
agctccgaatcaaaaaacgggtcaaatctcaactcaacaacaacggcaagttccataacttaatccaaaccgttgtttcaaatccccaaaccctcaccga |
414 |
Q |
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| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||| |
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| T |
3629289 |
aactccgaatcaaaaaacgggtcaaatctcaactcaacaacaacggcaagttccataacttagtccaaaccgtcgtttcaaatccccaaaccctcaccga |
3629190 |
T |
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| Q |
415 |
cgcttacaacattatcaaaatcaactccaatat |
447 |
Q |
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| T |
3629189 |
cacttacaacattatcaaaatcaactccaatat |
3629157 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 44 - 81
Target Start/End: Complemental strand, 22513240 - 22513203
Alignment:
| Q |
44 |
tcaccaccacttcaaatttcctcaaatcacttcactct |
81 |
Q |
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||||||||||||||| ||||||||||| |||||||||| |
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| T |
22513240 |
tcaccaccacttcaagtttcctcaaataacttcactct |
22513203 |
T |
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