View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13048_low_2 (Length: 728)
Name: NF13048_low_2
Description: NF13048
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13048_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 475; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 475; E-Value: 0
Query Start/End: Original strand, 20 - 506
Target Start/End: Complemental strand, 41615237 - 41614751
Alignment:
| Q |
20 |
catcgtgcattttgtagtgacctaaattaaacatcattttttaggggaggctgttcaatacaaggagacagctatatgcataacttatacttggaaataa |
119 |
Q |
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| T |
41615237 |
catcgtgcattttgtagtgacctaaatttaacatcattttttaggggaggctgttcaatgcaaggagacagctatatgcataacttatacttggaaataa |
41615138 |
T |
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| Q |
120 |
aagttgcctagcaaatattctttagctcaaactattaaataatggaacaagaagagataaagtgaatattcttgaactattgaaaaatagaataatctga |
219 |
Q |
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| T |
41615137 |
aagttgcctagcaaatattctttagctcaaactattaaataatggaacaagaagagataaagtgaatattcttgaactattgaaaaatagaataatctga |
41615038 |
T |
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| Q |
220 |
atgcaattggaaaggagtgtctatacaagaggaactcaaagagatatagtagactaatccaacctaattagattggttataataacaaactaaccaatta |
319 |
Q |
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| T |
41615037 |
atgcaattggaaaggagtgtctatacaagaggaactcaaagagatatagtagactaatccaacctaattagattggttataataacaaactaaccaatta |
41614938 |
T |
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| Q |
320 |
gggaaggctaactgaaaattaaaatacttctttttgttgactatattacaaacttttcacttcttgcaatatagttaaccaagtggaacgttatctataa |
419 |
Q |
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| T |
41614937 |
gggaaggctaactgaaaattaaaatacttctttttgttgactatattacaaacttttcacttcttgcaatatagttaaccaagtggaacgttatctataa |
41614838 |
T |
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| Q |
420 |
ataatttgatcatgttgctaacaaattctccctttccataccgatttctaattactaactcttgcttataataatattataaatatt |
506 |
Q |
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| T |
41614837 |
ataatttgatcatgttgctaacaaattctccctttccataccgatttctaactactaactcttgcttataataatattataaatatt |
41614751 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 507 - 719
Target Start/End: Complemental strand, 41614696 - 41614484
Alignment:
| Q |
507 |
gagttaagacaatatgcgaaataaagaaaagacacatcattttttgttgcaaaagatgaaaaagaaatacaaataattgtaatttgtattcgtacaaaaa |
606 |
Q |
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||||||| | ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||| ||||||||||||||||||| |
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| T |
41614696 |
gagttaaaaaaatatgcgaaataaagaaaagacacatcattttttattgcaaaagatgaaaaagaaatacaaatgattgtcatttgtattcgtacaaaaa |
41614597 |
T |
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| Q |
607 |
atattgatgaaactatgtatggcttgctcnnnnnnnnnnnnnnnnnnnnnnctatgtacgggttgcattttgcattgcaagtcgcacaaccttcgttgtt |
706 |
Q |
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| T |
41614596 |
atattgatgaaactatgcatggcttgctcaaaaaaagaaggaaaaagaaaactatgtacgggttgcattttgcattgcaagtcgcacgacctccgttgtt |
41614497 |
T |
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| Q |
707 |
atctttgcctttg |
719 |
Q |
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|||||||| |||| |
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| T |
41614496 |
atctttgcgtttg |
41614484 |
T |
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