View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13048_low_3 (Length: 488)

Name: NF13048_low_3

Description: NF13048

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF13048_low_3

[»] chr4 (1 HSPs)

Alignment Details

Target: chr4 (Bit Score: 352; Significance: 0; HSPs: 1)

Name: chr4

Description:

Target: chr4; HSP #1

Raw Score: 352; E-Value: 0

Query Start/End: Original strand, 19 - 488

Target Start/End: Original strand, 42448394 - 42448869

Alignment:

Q	19	gtagttcagttgatccgatcagatcacattctttccttcaannnnnnnn--accaaccatagtgtaaaaattcataaattttaccaaacaagcatagtgt	116	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	42448394	gtagttcagttgatccgatcagatcatattctttccttcaaatttttttgtaccaaccatagtgtaaaaattcataaattttaccaaacaagcatagtgt	42448493	T

Q	117	aaaaattaattttagatggaaaatagagagacaaaattgtattgaaaccttttattttatttctctgttgaaaaattcttatggataagctcgtttannn	216	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	42448494	aaaaattaattttagatggaaaatagagagacaaaattgtattgaaaccttttattttatttctctgttgaaaaattcttatggataagctcgtttattt	42448593	T

Q	217	nnnnnnnnnnnnn----cctctaagttatgttgtctgttatagctttgcctatactgccgctagaaatttacgagggaagggatacgtggggaccaacgc	312	Q
		\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	42448594	tttttcttttcttttttcctctaagttatattgtctgttatagctttgcctatactgccgctagaaatttacgagggaagggatacgtggggaccaacgc	42448693	T

Q	313	tagaaaaatgacttccgaaacgaatctcagttgaaaaaacccgttgtcatcagggtttcagattactttgctcaatacaatatattttcacatttgcatt	412	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	42448694	tagaaaaatgacttccgaaacggatatcagttgaaaaaacccgttgtcattagggtttcagattactttgctcaatacaatatattttcacatttgcatt	42448793	T

Q	413	tcatatttctctcaatctcattcccctctagttgcaggaatccaccatcggtctcggagatggaaaaatcagtgtt	488	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	42448794	tcatatttctctcaatctcattcccctctagttgcaggaatccaccatcggactcggagatggaaaaatcagtgtt	42448869	T

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