View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13048_low_6 (Length: 292)
Name: NF13048_low_6
Description: NF13048
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13048_low_6 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 102; Significance: 1e-50; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 158 - 292
Target Start/End: Original strand, 34174365 - 34174499
Alignment:
| Q |
158 |
cacaacagatacagcagcaacaaaccggtctaaaccggaccaaaacccctaagtcagccacgaacacagtagcaaaacagcatcnnnnnnncataaacac |
257 |
Q |
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| T |
34174365 |
cacaacagatacagcagcaacacaccggtctaaaccggaccaaaacccctaagtcagtcacgaacacagtagcaaaacagcaacaaaaaaacataaacac |
34174464 |
T |
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| Q |
258 |
cagcagcagccaagaaccaaaggaaaaacaagagc |
292 |
Q |
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| T |
34174465 |
cagcagcagccaagaaccaaaggaaaaacaagagc |
34174499 |
T |
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Target: chr2; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 6 - 96
Target Start/End: Original strand, 34174204 - 34174297
Alignment:
| Q |
6 |
cacagaaccaaaacaaatcaactgccgtcctatataggtggaacacccgatacccacaac---acagccaccgaatggactcgactgcgcttct |
96 |
Q |
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| T |
34174204 |
cacataaccaaaacaaatcaactgccgtcctatataggtggaacacccgatacccacaacagtacagccaccgaatggactcgactgcgcttct |
34174297 |
T |
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