View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13048_low_7 (Length: 264)

Name: NF13048_low_7

Description: NF13048

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF13048_low_7

[»] chr3 (1 HSPs)

[»] chr8 (1 HSPs)

Target: chr3 (Bit Score: 192; Significance: 1e-104; HSPs: 1)

Name: chr3

Description:

Target: chr3; HSP #1

Raw Score: 192; E-Value: 1e-104

Query Start/End: Original strand, 16 - 207

Target Start/End: Complemental strand, 49578107 - 49577916

Alignment:

Q	16	ataaataagccaagtgaatggttgttagttgctacccaacaagatgcaggaaatgtaaatgagaaatgtgaggaaaaatctctttttaacactcttttta	115	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	49578107	ataaataagccaagtgaatggttgttagttgctacccaacaagatgcaggaaatgtaaatgagaaatgtgaggaaaaatctctttttaacactcttttta	49578008	T

Q	116	gtaagagagtatgtgttagaaaaaatatgaaaaatagagtgtccataacccttctaaatgcaaataatcaagttaaaatatgaccactagta	207	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	49578007	gtaagagagtatgtgttagaaaaaatatgaaaaatagagtgtccataacccttctaaatgcaaataatcaagttaaaatatgaccactagta	49577916	T

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Target: chr8 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)

Name: chr8

Description:

Target: chr8; HSP #1

Raw Score: 30; E-Value: 0.00000009

Query Start/End: Original strand, 170 - 199

Target Start/End: Original strand, 31579232 - 31579261

Alignment:

Q	170	taaatgcaaataatcaagttaaaatatgac	199	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	31579232	taaatgcaaataatcaagttaaaatatgac	31579261	T

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