View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13049_high_11 (Length: 414)
Name: NF13049_high_11
Description: NF13049
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13049_high_11 |
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| [»] scaffold1333 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 108; Significance: 4e-54; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 222 - 397
Target Start/End: Original strand, 6241223 - 6241380
Alignment:
| Q |
222 |
ctctattttaaatcatatcttatgtttttcagtacaaaatattttacatcatatctaataattactgtatgtatacatcataaaaaatgtttaacaatgt |
321 |
Q |
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| T |
6241223 |
ctctattttaaatcatatcttatgtttttcagtacaaaatattttacatcatatctaataattactgtat----------------atgt--aacaatgt |
6241304 |
T |
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| Q |
322 |
aggactaccctaatattagccatgtatatatgtgtaaactcaaatggtggaatataagtcaaacggtgcaatatct |
397 |
Q |
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| T |
6241305 |
aggactaccctaatattagccatgtatatatgtgtaaactcaaatggtggaatacaagtcaaacggtgcaatatct |
6241380 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 227 - 397
Target Start/End: Original strand, 6212301 - 6212456
Alignment:
| Q |
227 |
ttttaaatcatatcttatgtttttcagtacaaaatattttacatcatatctaataattactgtatgtatacatcataaaaaatgtttaacaatgtaggac |
326 |
Q |
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| T |
6212301 |
ttttaaatcatatctaatgtttttcattacaaaatattttacatcatatctaataattactgtat----------------atgt--aacaatgtaggac |
6212382 |
T |
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| Q |
327 |
taccctaatattagccatgtatatatgtgtaaactcaaatggtgga----atataagtcaaacggtgcaatatct |
397 |
Q |
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| T |
6212383 |
taccctaatattagccatgtatatatgtgt-aactcaaatggtggaatatatataagtcaaacggtgcaatatct |
6212456 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1333 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold1333
Description:
Target: scaffold1333; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 309 - 363
Target Start/End: Original strand, 94 - 148
Alignment:
| Q |
309 |
tgtttaacaatgtaggactaccctaatattagccatgtatatatgtgtaaactca |
363 |
Q |
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| T |
94 |
tgtttaacaatgtaaaactagccaaatattagccatgtatgtgtgtgtaaactca |
148 |
T |
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