View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13049_high_13 (Length: 387)
Name: NF13049_high_13
Description: NF13049
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13049_high_13 |
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Alignment Details
Target: chr3 (Bit Score: 219; Significance: 1e-120; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 18 - 255
Target Start/End: Original strand, 48683926 - 48684161
Alignment:
| Q |
18 |
actgatgcccttaactagtggctaataatttcctacttgatatgtaaattttttatgtgcaaaacttgaatgcggtttctcgtgtattgtttttattatt |
117 |
Q |
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| T |
48683926 |
actgatgcccttaactagtggctaataatttcctacttgatatgtaaattttttatgtgcaaaacttgaatgcggtttctcgtgtattgtttttattatt |
48684025 |
T |
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| Q |
118 |
ctctgatcactatttaacatacagacagtgtatatttaacagtctaaacataatcattttaaaattaaatttagctgaaaaagtttaataatctgtggac |
217 |
Q |
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| T |
48684026 |
ctctgatcactatttaacatacagacagtg--tatttaacagtctaagcataatcattttaaaattaaatttagctgaaaaagtttaataatctgtggac |
48684123 |
T |
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| Q |
218 |
acattacagattggtgaacatcacaaacaaggcataag |
255 |
Q |
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| T |
48684124 |
acattacaaattggtgaacatcacaaacaaggcataag |
48684161 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 315 - 387
Target Start/End: Original strand, 48684222 - 48684294
Alignment:
| Q |
315 |
tagagtagataggtatcattgtacaaaccaaagatttcaactaagttggaattaaagtaattgctaatcaatt |
387 |
Q |
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|||||||| |||||||||||||||||||| ||||||||||||||||| ||||||| || |||||||||||| |
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| T |
48684222 |
tagagtaggaaggtatcattgtacaaaccagtgatttcaactaagttggtattaaagaaagtgctaatcaatt |
48684294 |
T |
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