View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13049_high_18 (Length: 332)

Name: NF13049_high_18
Description: NF13049
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13049_high_18
NF13049_high_18
[»] chr8 (1 HSPs)
chr8 (24-316)||(41874174-41874466)


Alignment Details
Target: chr8 (Bit Score: 260; Significance: 1e-145; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 24 - 316
Target Start/End: Complemental strand, 41874466 - 41874174
Alignment:
Q  24 agacgaggtatgggaagccaaggtagatttgtgtttgattatcatgtgttttttgtttaaattaaagggtcatggggagaccaaaattagcaattttgca 123  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  41874466 agacgaggtatgggaagccaaggtagatttgtgtttgattatcatttgttttttgtttaaattaaagggtcatggggataccaaaattagcaattttgca 41874367  T
Q  124 ttacaaataacagttgaattcactatattttatcaccgtccacaatagttctatttttcactttaacagtacccttactcattagtannnnnnnaaaatt 223  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||       ||||||    
T  41874366 ttacaaataacagttgaattcactatattttatcaccgtccacaatagttctatttttcactttaacagtacccttactcattactatttttttaaaatt 41874267  T
Q  224 aagttattgtttttggtagaatgatgtagaggagtttggtgatgattaaataataaagcatcaaattagttatttatagagaatgttatatag 316  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41874266 aagttattgtttttggtagaatgatgtagaggagtttggtgatgattaaataataaagcatcaaattagttatttatagagaatgttatatag 41874174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University