View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13049_high_20 (Length: 326)
Name: NF13049_high_20
Description: NF13049
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13049_high_20 |
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Alignment Details
Target: chr4 (Bit Score: 243; Significance: 1e-135; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 18 - 316
Target Start/End: Complemental strand, 24513874 - 24513576
Alignment:
| Q |
18 |
gaatatgtataagatggtaaagttgaagttactgagatgatttctctttctttttatgtagcctgtctattccctaccagtctaaatcctgagattcttg |
117 |
Q |
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| T |
24513874 |
gaatatgtataagatggtaaagttgaagttactgagatgatttctctttctttttatgtagcctgtctattccctaccagtctaaatcctgagattcttg |
24513775 |
T |
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| Q |
118 |
agggtttgttggcatcaggtttgcattgctcaataannnnnnnnnnnnnnnnggcactttgatttgcaatgtatatttgttgattattctgttataatta |
217 |
Q |
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| T |
24513774 |
agggtttgttggcatcaggtttgcattgctcaataattttattttattttttggcactttgttttgcaatgtatatttgttgattattctgttataatta |
24513675 |
T |
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| Q |
218 |
cagttggtggtgttatggcttttttgacccttcatgaaatgctgccattggcttttgagtatgctggacagaaaaaatctgttaaggctgtcttctgtg |
316 |
Q |
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| T |
24513674 |
cagttggtggtgttatggcttttttgacccttcatgaaatgctgccattggcttttgagtatgctggagagaaaaaatctgttaaggctgtcttctgtg |
24513576 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 63; Significance: 2e-27; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 214 - 308
Target Start/End: Complemental strand, 41946818 - 41946724
Alignment:
| Q |
214 |
attacagttggtggtgttatggcttttttgacccttcatgaaatgctgccattggcttttgagtatgctggacagaaaaaatctgttaaggctgt |
308 |
Q |
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|||||||||||||| |||||||||||| |||| ||||||||||||||||| ||||||||||| |||||||||||||| ||||||| |||||||| |
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| T |
41946818 |
attacagttggtggagttatggcttttctgactcttcatgaaatgctgccgttggcttttgattatgctggacagaagcaatctgtaaaggctgt |
41946724 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 53 - 118
Target Start/End: Complemental strand, 41946979 - 41946914
Alignment:
| Q |
53 |
gatgatttctctttctttttatgtagcctgtctattccctaccagtctaaatcctgagattcttga |
118 |
Q |
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|||||||||| ||||||| | |||||||| ||||||||||| | | ||||||||||||||||||| |
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| T |
41946979 |
gatgatttctttttctttctctgtagcctatctattccctagccgcttaaatcctgagattcttga |
41946914 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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