View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13049_high_21 (Length: 324)
Name: NF13049_high_21
Description: NF13049
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13049_high_21 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 247; Significance: 1e-137; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 28 - 314
Target Start/End: Original strand, 52445945 - 52446231
Alignment:
| Q |
28 |
cttcatgtgttgttgtataatgctttggttgagttgatgctctgttcacaatcataatgtatagttatgttgatgttcattattttattattggtgttta |
127 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||| |
|
|
| T |
52445945 |
cttcatgtgttgttgtataatgctttggtcgagttgatactctgttcacaatcataatgtatagttgtgttgatgttcattattttattattggcgttta |
52446044 |
T |
|
| Q |
128 |
tttacatctttctattgtttcaatttatggatgattcacaatttcaatcgcaatgtacgtgtctctggttttgttctttttagattgtttcattttatta |
227 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
52446045 |
tttacatctttctattgtttcaatttatggatgattcacaatttcaatcacaatgtatgtgtctctggttttgttctttttagattgtttcattttatca |
52446144 |
T |
|
| Q |
228 |
ttgatgattcatagtcgcagtgcatgtgtatgtgacgttgttttgttctttcggattcactctgtgtttgtgttgtattgctctgtg |
314 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||| |||| |
|
|
| T |
52446145 |
ttgatgattcatagtcgcagtgcatgtgtatgtgacgttgtttcgttctttcggattcactttgtgtttgtgttgtattgctttgtg |
52446231 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 33 - 314
Target Start/End: Original strand, 52446890 - 52447167
Alignment:
| Q |
33 |
tgtgttgttgtataatgctttggttgagttgatgctctgttcacaatcataatgtatagttatgttgatgttcattattttattattggtgtttatttac |
132 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||| | ||||||| |||||||| |||||||||||||||||| || |||||||||||||||||||| |
|
|
| T |
52446890 |
tgtgttgttgtataatgcttcaattgagttgatgctctatccacaatcgtaatgtatggttatgttgatgttcattgttctattattggtgtttatttac |
52446989 |
T |
|
| Q |
133 |
atctttctattgtttcaatttatggatgattcacaatttcaatcgcaatgtacgtgtctctggttttgttctttttagattgtttcattttattattgat |
232 |
Q |
| |
|
| ||| |||||||| |||||| |||||||| ||||||||||| | |||| | |||| | |||||||| ||| ||||||||||||||||||||||||| |
|
|
| T |
52446990 |
acgtttttattgttttaatttagggatgatt-acaatttcaatagtaatggatgtgtatgtggttttg---tttgtagattgtttcattttattattgat |
52447085 |
T |
|
| Q |
233 |
gattcatagtcgcagtgcatgtgtatgtgacgttgttttgttctttcggattcactctgtgtttgtgttgtattgctctgtg |
314 |
Q |
| |
|
|||||||| ||||| || |||||| ||| |||||||||||||||||| |||||||| |||| ||||||||||||||| |||| |
|
|
| T |
52447086 |
gattcataatcgcaatgtatgtgtttgttacgttgttttgttctttcagattcactttgtgcttgtgttgtattgctttgtg |
52447167 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University