View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13049_high_31 (Length: 228)
Name: NF13049_high_31
Description: NF13049
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13049_high_31 |
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Alignment Details
Target: chr4 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 213
Target Start/End: Complemental strand, 46455976 - 46455765
Alignment:
| Q |
1 |
gtggttttccgtatatgaatttttgttcagacttgctcatatataggtcttatgctacaagcagtaaaatggcatgttttggatttttgccaatgtaagt |
100 |
Q |
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| T |
46455976 |
gtggttttccgtatatgaatttttgttcagacttgctcatatataggtcttatgctacaagcagtaaa-tggcatgttttggatttttgccaatgtaagt |
46455878 |
T |
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| Q |
101 |
aatgcggttttcttacatttggatttagaaagtgtataaaataaaagtggtaaacctcaggaaaatagaaaggaatgctatgttttgttattatgcttgg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
46455877 |
aatgcggttttcttacatttggatttagaaagtgtataaaataaaagtggtaaacctcaggaaaatagaaaggaatactatgttttgttattatgcttgg |
46455778 |
T |
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| Q |
201 |
gaaatataatatc |
213 |
Q |
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||||||||||||| |
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| T |
46455777 |
gaaatataatatc |
46455765 |
T |
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