View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13049_high_32 (Length: 226)
Name: NF13049_high_32
Description: NF13049
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13049_high_32 |
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Alignment Details
Target: chr1 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 48671357 - 48671138
Alignment:
| Q |
1 |
caaatccctattaaccaaaggccttaatgtcacacttgccaccactgaattagtttaccaccgtgtcttcaaatcaaccaccaccgacacggacaccgtc |
100 |
Q |
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| T |
48671357 |
caaatccctattaaccaaaggccttaatgtcacacttgccaccactgaattagtttaccaccgtgtcttcaaatcaaccaccaccgacacagacaccgtc |
48671258 |
T |
|
| Q |
101 |
ccaacttcttactccaccaatggaatcaacgtcctgtttttctccgacggcttcgacatatctcaaggccttaaaagccctgatgaatacatggaactca |
200 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
48671257 |
ccaacctcttactccaccaatggaatcaacgtcctgtttttctccgacggcttcgacatatctcaaggccataaaagccctgatgaatacatggaactca |
48671158 |
T |
|
| Q |
201 |
tagccaaattcggtcccatt |
220 |
Q |
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|||||||||||||||||||| |
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| T |
48671157 |
tagccaaattcggtcccatt |
48671138 |
T |
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