View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13049_high_35 (Length: 204)

Name: NF13049_high_35
Description: NF13049
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13049_high_35
NF13049_high_35
[»] chr8 (1 HSPs)
chr8 (18-186)||(29368325-29368493)
[»] chr4 (3 HSPs)
chr4 (113-171)||(22643657-22643715)
chr4 (71-177)||(35087466-35087572)
chr4 (24-178)||(22176853-22177008)
[»] scaffold0329 (1 HSPs)
scaffold0329 (24-178)||(11223-11378)
[»] chr3 (2 HSPs)
chr3 (24-178)||(19586622-19586777)
chr3 (68-178)||(12285559-12285669)
[»] chr1 (1 HSPs)
chr1 (24-178)||(52777894-52778049)
[»] chr5 (1 HSPs)
chr5 (119-177)||(11924575-11924633)
[»] chr6 (2 HSPs)
chr6 (71-111)||(6569591-6569631)
chr6 (68-104)||(12301048-12301084)
[»] chr2 (1 HSPs)
chr2 (71-171)||(27036086-27036185)


Alignment Details
Target: chr8 (Bit Score: 153; Significance: 3e-81; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 18 - 186
Target Start/End: Complemental strand, 29368493 - 29368325
Alignment:
Q  18 attatacatcaaaaatcatgtgaggaaaatccacatcaaaatgtaaggtggaaagaaaacatcaaaatattctcaatgtaagaagagttttactgtttca 117  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |    
T  29368493 attatacatcaaaaatcatgtgaggaaaatccacagcaaaatgtaaggtggaaaggaaacatcaaaatattctcaatgtaagaagagttttactgtttga 29368394  T
Q  118 gtcaaaattaccccctacattttggtcttatgctatctttcatgttgtgtttctaatcaactgtgtttc 186  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29368393 gtcaaaattacccccaacattttggtcttatgctatctttcatgttgtgtttctaatcaactgtgtttc 29368325  T

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Target: chr4 (Bit Score: 35; Significance: 0.00000000007; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 113 - 171
Target Start/End: Original strand, 22643657 - 22643715
Alignment:
Q  113 tttcagtcaaaattaccccctacattttggtcttatgctatctttcatgttgtgtttct 171  Q
    ||||| ||||||||||| ||||||||||||||||||||| || | |||| |||||||||    
T  22643657 tttcaatcaaaattacctcctacattttggtcttatgctgtcctccatgctgtgtttct 22643715  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 71 - 177
Target Start/End: Original strand, 35087466 - 35087572
Alignment:
Q  71 agaaaacatcaaaatattctcaatgtaagaagagttttactgtttcagtcaaaattaccccctacattttggtcttatgctatctttcatgttgtgtttc 170  Q
    |||||||||||| |||||||||||||  | |||| |||| | ||||| || ||||| || ||| | |||||||| ||||| || || |||||||||||||    
T  35087466 agaaaacatcaacatattctcaatgttggcagagctttattatttcaatccaaattgccgccttctttttggtcatatgccattttacatgttgtgtttc 35087565  T
Q  171 taatcaa 177  Q
    | |||||    
T  35087566 tcatcaa 35087572  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 24 - 178
Target Start/End: Complemental strand, 22177008 - 22176853
Alignment:
Q  24 catcaaaaatcatgtgaggaaaatccacatcaaaatgtaag-gtggaaagaaaacatcaaaatattctcaatgtaagaagagttttactgtttcagtcaa 122  Q
    ||||||||||| ||||  |||| ||| || |||||||  || || ||||| ||||| ||| |||||||||||||| | |||| |||| | ||||| || |    
T  22177008 catcaaaaatcttgtgttgaaactccccaacaaaatggtagagtagaaaggaaacaccaacatattctcaatgtaggtagagctttattatttcaatcca 22176909  T
Q  123 aattaccccctacattttggtcttatgctatctttcatgttgtgtttctaatcaac 178  Q
    || | || ||| | |||||||| ||||||||  |||||| |||||| |||||||||    
T  22176908 aactcccaccttccttttggtcatatgctattcttcatgctgtgttcctaatcaac 22176853  T

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Target: scaffold0329 (Bit Score: 32; Significance: 0.000000004; HSPs: 1)
Name: scaffold0329
Description:

Target: scaffold0329; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 24 - 178
Target Start/End: Original strand, 11223 - 11378
Alignment:
Q  24 catcaaaaatcatgtgaggaaaatccacatcaaaatgtaag-gtggaaagaaaacatcaaaatattctcaatgtaagaagagttttactgtttcagtcaa 122  Q
    ||||||||||| ||||  |||| ||| || |||||||  || || ||||| ||||| ||| |||||||||||||| | |||| |||| | ||||| || |    
T  11223 catcaaaaatcttgtgttgaaactccccaacaaaatggtagagtagaaaggaaacaccaacatattctcaatgtaggtagagctttattatttcaatcca 11322  T
Q  123 aattaccccctacattttggtcttatgctatctttcatgttgtgtttctaatcaac 178  Q
    || | || ||| | |||||||| ||||||||  |||||| |||||| |||||||||    
T  11323 aactcccaccttccttttggtcatatgctattcttcatgctgtgttcctaatcaac 11378  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000004; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 24 - 178
Target Start/End: Complemental strand, 19586777 - 19586622
Alignment:
Q  24 catcaaaaatcatgtgaggaaaatccacatcaaaatgtaag-gtggaaagaaaacatcaaaatattctcaatgtaagaagagttttactgtttcagtcaa 122  Q
    ||||||||||| ||||  |||| ||| || |||||||  || || ||||| ||||| ||| | |||||||||||| | |||| |||| | ||||| || |    
T  19586777 catcaaaaatcttgtgttgaaactccccaacaaaatggtagagtagaaaggaaacaccaacacattctcaatgtaggtagagctttattatttcaatcca 19586678  T
Q  123 aattaccccctacattttggtcttatgctatctttcatgttgtgtttctaatcaac 178  Q
    || | || ||| | |||||||| ||||||||  ||||||||||||| |||||||||    
T  19586677 aactcccaccttctttttggtcatatgctattcttcatgttgtgttcctaatcaac 19586622  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 68 - 178
Target Start/End: Original strand, 12285559 - 12285669
Alignment:
Q  68 gaaagaaaacatcaaaatattctcaatgtaagaagagttttactgtttcagtcaaaattaccccctacattttggtcttatgctatctttcatgttgtgt 167  Q
    ||||| ||||| ||| |||||||||||||| | |||| |||| | ||||| || ||| | || ||| | |||||||| ||||||||  |||||| |||||    
T  12285559 gaaaggaaacaccaacatattctcaatgtaggtagagctttattatttcaatccaaactcccaccttctttttggtcatatgctattcttcatgctgtgt 12285658  T
Q  168 ttctaatcaac 178  Q
    | |||||||||    
T  12285659 tcctaatcaac 12285669  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 24 - 178
Target Start/End: Original strand, 52777894 - 52778049
Alignment:
Q  24 catcaaaaatcatgtgaggaaaatccacatcaaaatgtaag-gtggaaagaaaacatcaaaatattctcaatgtaagaagagttttactgtttcagtcaa 122  Q
    ||||||||||| ||||  |||| ||| || |||||||  || || ||||| ||||| ||| |||||||||||||| | |||| |||| | ||||| || |    
T  52777894 catcaaaaatcttgtgttgaaactccccaacaaaatggtagagtagaaaggaaacaccaacatattctcaatgtaggtagagctttattatttcaatcca 52777993  T
Q  123 aattaccccctacattttggtcttatgctatctttcatgttgtgtttctaatcaac 178  Q
    || | || ||| | |||||||| ||||||||  |||||| |||||| |||||||||    
T  52777994 aactcccaccttctttttggtcatatgctattcttcatgctgtgttcctaatcaac 52778049  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 119 - 177
Target Start/End: Original strand, 11924575 - 11924633
Alignment:
Q  119 tcaaaattaccccctacattttggtcttatgctatctttcatgttgtgtttctaatcaa 177  Q
    ||||||||||| ||| | |||||||||||| ||||  |||||||||||||||| |||||    
T  11924575 tcaaaattacctccttctttttggtcttattctatacttcatgttgtgtttcttatcaa 11924633  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 71 - 111
Target Start/End: Complemental strand, 6569631 - 6569591
Alignment:
Q  71 agaaaacatcaaaatattctcaatgtaagaagagttttact 111  Q
    |||||||||||| |||||||||||||| |||||| ||||||    
T  6569631 agaaaacatcaatatattctcaatgtaggaagagctttact 6569591  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 68 - 104
Target Start/End: Original strand, 12301048 - 12301084
Alignment:
Q  68 gaaagaaaacatcaaaatattctcaatgtaagaagag 104  Q
    ||||||||||||||| |||||||||||||||| ||||    
T  12301048 gaaagaaaacatcaacatattctcaatgtaagtagag 12301084  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 71 - 171
Target Start/End: Complemental strand, 27036185 - 27036086
Alignment:
Q  71 agaaaacatcaaaatattctcaatgtaagaagagttttactgtttcagtcaaaattaccccctacattttggtcttatgctatctttcatgttgtgtttc 170  Q
    |||||||||||  |||||||||||||  | |||| |||| | ||||| ||||||||||| ||| | |||||||| ||||| || || |||| ||||||||    
T  27036185 agaaaacatcagcatattctcaatgttggcagagctttattatttcaatcaaaattaccacct-ctttttggtcatatgccattttacatgctgtgtttc 27036087  T

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