View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13049_high_4 (Length: 527)
Name: NF13049_high_4
Description: NF13049
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13049_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 348; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 150 - 509
Target Start/End: Complemental strand, 39847096 - 39846737
Alignment:
| Q |
150 |
caagactatgtttacatacacttagtttcaactaaaaaggacactcaacaaaaagaaggggtgtccctaacttagccaaaatagagcgccatcatataca |
249 |
Q |
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| T |
39847096 |
caagactatgtttacatacacttagtttcaactaaaaaggacactcaacaaaaagaaggggtgtccctaacttagcgaaaatagagctccatcatataca |
39846997 |
T |
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| Q |
250 |
ctattagatttatagtatatatgggtctagctctttggagttttattaattagttagtactagaaccaaatggctctagcagccatgagcatttgtttga |
349 |
Q |
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| T |
39846996 |
ctattagatttatagtatatatgggtctagctctttggagttttattaaatagttagtactagaaccaaatggctctagcagccatgagcatttgtttga |
39846897 |
T |
|
| Q |
350 |
gtgatccatcaacatgaagagatatcacatcctttgatgaccctacaaattttccaccaatgaacactgctggcactgaagggttacatccaagactcct |
449 |
Q |
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| T |
39846896 |
gtgatccatcaacatgaagagatatcacatcctttgatgaccctacaaattttccaccaatgaacactgctggcactgaagggttacatccaagactcct |
39846797 |
T |
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| Q |
450 |
caaagccctttccatttccctaccatagggttcattgtcaagctcatgcacagcaggact |
509 |
Q |
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| T |
39846796 |
caaagccctttccatttccctaccatagggttcattgtcaagctcatgcacagcaggact |
39846737 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 1 - 128
Target Start/End: Complemental strand, 39847252 - 39847125
Alignment:
| Q |
1 |
cgaaaatgacaaaatatttctcagaaagtttaaagctgcattaacaagaatagagaagnnnnnnnnctctattatccaagttcgatagaactttgattta |
100 |
Q |
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| T |
39847252 |
cgaaaatgacaaaatatttctcagaaagtttaaagctgcattaacaagaatagagaagttttttttctctattgtccaagttcgatagaactttgattta |
39847153 |
T |
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| Q |
101 |
catcagccatagtaagctggtattttgg |
128 |
Q |
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| T |
39847152 |
catcagccatagtaagctggtattttgg |
39847125 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 94; Significance: 1e-45; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 308 - 476
Target Start/End: Original strand, 44005049 - 44005220
Alignment:
| Q |
308 |
actagaaccaaatggctctagcagccatgagcatttgtttgagtgatccatcaacatgaagagatatcacatcctttgatgaccctacaaattttccacc |
407 |
Q |
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|||| ||||||||||| | ||| |||| |||||||||||||||||||||||||||||| ||||||||||||| ||||| || ||||||||||||||||| |
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| T |
44005049 |
actaaaaccaaatggcctttgcatccataagcatttgtttgagtgatccatcaacatgatgagatatcacatcttttgaggatcctacaaattttccacc |
44005148 |
T |
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| Q |
408 |
aatgaacactgctggcactgaagggttacatccaa---gactcctcaaagccctttccatttccctaccata |
476 |
Q |
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| T |
44005149 |
tatgaacactgctggaactgaagggttacatccaaaattacccctcaaagcccattccatttctctaccata |
44005220 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 308 - 509
Target Start/End: Original strand, 44008975 - 44009179
Alignment:
| Q |
308 |
actagaaccaaatggctctagcagccatgagcatttgtttgagtgatccatcaacatgaagagatatcacatcctttgatgaccctacaaattttccacc |
407 |
Q |
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|||| ||||||||||| | ||| |||| |||||||||||||| ||||||||||||||| ||||||||||||| ||||| || || |||||||||||||| |
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| T |
44008975 |
actaaaaccaaatggcctttgcatccataagcatttgtttgagagatccatcaacatgatgagatatcacatcttttgaagatccaacaaattttccacc |
44009074 |
T |
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| Q |
408 |
aatgaacactgctggcactgaagggttacatccaa---gactcctcaaagccctttccatttccctaccatagggttcattgtcaagctcatgcacagca |
504 |
Q |
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|||||||||||||| ||||||||||||||||||| || ||||||||||| ||||||||| |||||||| | |||||||| || |||| || ||| |
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| T |
44009075 |
tatgaacactgctggaactgaagggttacatccaaaattacccctcaaagcccattccatttctctaccatatgtatcattgtctagttcatatactgca |
44009174 |
T |
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| Q |
505 |
ggact |
509 |
Q |
| |
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||||| |
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| T |
44009175 |
ggact |
44009179 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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