View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13049_high_6 (Length: 496)
Name: NF13049_high_6
Description: NF13049
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13049_high_6 |
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Alignment Details
Target: chr5 (Bit Score: 438; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 438; E-Value: 0
Query Start/End: Original strand, 19 - 476
Target Start/End: Complemental strand, 41971113 - 41970656
Alignment:
| Q |
19 |
atgtcgtttctgttttctcttcttgtattatctaatttttaatttgtataatgcaacctctgaattgtaatttgttttataagactgtttgaattaagat |
118 |
Q |
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| T |
41971113 |
atgtcgtttctgttttctcttcttgtattatctaatttttaatttgtataatgcaacctctgaattataatttattttataagactgtttgaattaagat |
41971014 |
T |
|
| Q |
119 |
aactctttaatttgtcgaatgaggcagtgtctcaatattttattggtgagtatgctattctgatttaaaagtactcatttttgaatttatcaggcttgct |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41971013 |
aactctttaatttgtcgaatgaggcagtgtctcaatattttattggtgagcatgctattctgatttaaaagtactcatttttgaatttatcaggcttgct |
41970914 |
T |
|
| Q |
219 |
tacttttctatgtttgatacaaacctattgaatttcaatgacatttaaagagataatacataccattaaggcaatgatgttattatgcttcaaattcgca |
318 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
41970913 |
tacttttctatgtttgatacaaacctattgaatttcaatgacatttaaagagataatacataccattaaggcaatgatgttattatgcttcaaattcaca |
41970814 |
T |
|
| Q |
319 |
atggaaaattgtattcaaagccaaatctcataatcgattgcttcacaatgttattcaaagatttgatatcattcacgctaacctttcgacaatgcaacct |
418 |
Q |
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| T |
41970813 |
atggaaaattgtattcaaagccaaatctcataatcgatcgcttcacaatgttattcaaagatttgatatcattcacgctaacctttcgacaatgcaacct |
41970714 |
T |
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| Q |
419 |
tctatggctgctacttttaaattgacttttggtacgctcaccaaaccagtttctacat |
476 |
Q |
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| T |
41970713 |
tctatggctgctacttttaaattgacttttggtacgctcaccaaaccagtttctacat |
41970656 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 216; Significance: 1e-118; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 126 - 476
Target Start/End: Complemental strand, 1238540 - 1238195
Alignment:
| Q |
126 |
taatttgtcgaatgaggcagtgtctcaatattttattggtgagtatgctattctgatttaaaagtactcatttttgaatttatcaggcttgcttactttt |
225 |
Q |
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||||||| |||||||||||||||||||||| |||| ||||||| ||| | ||||||||| ||||||||||||||||||||||||||| |||||||||||| |
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| T |
1238540 |
taatttgacgaatgaggcagtgtctcaatagtttactggtgagcatggtgttctgatttcaaagtactcatttttgaatttatcaggtttgcttactttt |
1238441 |
T |
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| Q |
226 |
ctatgtttgatacaaacctattgaatttcaatgacatttaaagagataatacataccattaaggcaatgatgttattatgcttcaaattcgcaatggaaa |
325 |
Q |
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| T |
1238440 |
ctatgtttgatacaaacctattgaatttcaatgacatttaaagagataatacatgccattaaggcagcgatgttattatgcttcaaattcgcaatggaaa |
1238341 |
T |
|
| Q |
326 |
attgtattcaaagccaaatctcataatcgattgcttcacaatgttattcaaagatttgatatcattcac-----gctaacctttcgacaatgcaaccttc |
420 |
Q |
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||||||||||| ||||| |||||||| ||| |||||||||||| |||||||||||||||| |||||||||||||||||||||||||| |
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| T |
1238340 |
attgtattcaagaccaaagctcataattgatagcttcacaatgt---------atttgatatcattcacgctaagctaacctttcgacaatgcaaccttc |
1238250 |
T |
|
| Q |
421 |
tatggctgctacttttaaattgacttttggtacgctcaccaaaccagtttctacat |
476 |
Q |
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||| |||||||||||| ||||||||||||||| |||||| |||| ||||||||||| |
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| T |
1238249 |
tat-gctgctacttttcaattgacttttggtatgctcactaaactagtttctacat |
1238195 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 19 - 97
Target Start/End: Complemental strand, 42517183 - 42517105
Alignment:
| Q |
19 |
atgtcgtttctgttttctcttcttgtattatctaatttttaatttgtataatgcaacctctgaattgtaatttgtttta |
97 |
Q |
| |
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|||||||| |||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||| ||||| |
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| T |
42517183 |
atgtcgttcctgttttctcttcttgtattttctaatttttaatttgtataatgcattctctgaattgtaatttatttta |
42517105 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 19 - 92
Target Start/End: Complemental strand, 1238607 - 1238534
Alignment:
| Q |
19 |
atgtcgtttctgttttctcttcttgtattat-ctaatttttaatttgtataatgcaacctctgaattgtaatttg |
92 |
Q |
| |
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||||| ||||||||||||||||||||||| | |||||||||||||| |||||||||||||||| ||||||||||| |
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| T |
1238607 |
atgtcatttctgttttctcttcttgtatttttctaatttttaatttttataatgcaacctctg-attgtaatttg |
1238534 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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