View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13049_high_7 (Length: 485)
Name: NF13049_high_7
Description: NF13049
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13049_high_7 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 412; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 412; E-Value: 0
Query Start/End: Original strand, 7 - 485
Target Start/End: Complemental strand, 27157984 - 27157508
Alignment:
| Q |
7 |
cctctgaaccataataagctgcagtatcaaaatgtctatagccaacttttattgcattgatgaatgctggaatgagttcatgatgtggtggtaaaggtac |
106 |
Q |
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| T |
27157984 |
cctctgaaccataataagctgcagtatcaaaatgtctatagccaacttttattgcattgatgaatgctggaatgagttcatgatgtggtggtaaaggtac |
27157885 |
T |
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| Q |
107 |
tgttccagtgccaaaccctagcattcgcattttgtggcctgaatttagcacaacttctggaattgattttgtttccattgtttctatggtatcaaagaga |
206 |
Q |
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| T |
27157884 |
tgttccagtgccaaaccctagcattggcattttgtggcctgaattaagcacaacttctggaattgattttgtttccattgtttctatggtatcaaagaga |
27157785 |
T |
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| Q |
207 |
tgggagattattgaatttataatatggttaatggtcttgttaaggaataatgtgataagtttaatatattgttagtaannnnnnngtcccttatccattg |
306 |
Q |
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| T |
27157784 |
tgggagattattgaatttataatatggttaatggtcttgttaaggaataatgtgataagtttaatatattgttagtaa-ttttttgtcccttatccattg |
27157686 |
T |
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| Q |
307 |
tttaagatttttaccaaaagtaaattgttgaagattctaaaatatgcatttagaaatgtaataaatagtttatttttaaaaaacaataatatgcatgaag |
406 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
27157685 |
tttaagatttttaccaaaagtaaattgttgaagattctaaaatatgcatttagaaatgtaataaatagtttattttt-aaaaacaataatatgcatgaag |
27157587 |
T |
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| Q |
407 |
actcattttgatccttgnnnnnnntgtatattcaactttagtcactggaaaagataaacatgaacaactttatcttaat |
485 |
Q |
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| T |
27157586 |
actcatttttatccttgaaaaaaatgtatattcaactttagtcactggaaaagataaacatgaacaactttatcttaat |
27157508 |
T |
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