View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13049_high_8 (Length: 442)
Name: NF13049_high_8
Description: NF13049
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13049_high_8 |
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Alignment Details
Target: chr4 (Bit Score: 377; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 18 - 436
Target Start/End: Original strand, 49296967 - 49297392
Alignment:
| Q |
18 |
gttggtggagccaatcaagttatgagtcttcatcttaaccgttccttaattccaatgcttaaaaaagctggtgctctttggctttaatctcaccag---g |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
49296967 |
gttggtggagccaatcaagttatgagtcttcatcttaaccgttccttaattccaatgcttaaaaaagctggtgctctttggctttaatctcaccagcagg |
49297066 |
T |
|
| Q |
115 |
ctcacacaaatctacttaataataataagttgaccttttttggttatatattatatagagaggcaatgttgagttaatcttagagattatggcactaggt |
214 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49297067 |
ctcacacaaatctacttaataataataagttgaccttttttggttatatat-atatagagaggcaatgttgagttaatcttagagattatggcactaggt |
49297165 |
T |
|
| Q |
215 |
ataattaattagtctaacttaattgatagatttggggtgccacttaaggacaaggatcttctacctttgctgcaataatgtgcagcaggtggattcaagt |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49297166 |
ataattaattagtctaacttaattgatagatttggggtgccacttaaggacaaggatcttctacctttgctgcaataatgtgcagcaggtggattcaagt |
49297265 |
T |
|
| Q |
315 |
atattgtttagccttcttttttaagggttaaatgtaatgttatcttttttataagtattgataataaatta-----aatactacatggttccacaagtta |
409 |
Q |
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| T |
49297266 |
ctattgtttagccttcttttttaagggttaaatgtaatgttatcttttttataagtattgataataaattaaagggaatactacatggttccacaagtta |
49297365 |
T |
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| Q |
410 |
caacctttttgcattatgatattatat |
436 |
Q |
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| T |
49297366 |
ctacctttttgcattatgatattatat |
49297392 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 18 - 419
Target Start/End: Original strand, 49290016 - 49290424
Alignment:
| Q |
18 |
gttggtggagccaatcaagttatgagtcttcatcttaaccgttccttaattccaatgcttaaaaaagctggtgctctttggctttaatctcaccag---g |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
49290016 |
gttggtggagccaatcaagttatgagtcttcatcttaaccgttccttaattccaatgcttaaaaaagctggtgctctttggctttaatctcaccagcagg |
49290115 |
T |
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| Q |
115 |
ctcacacaaatctacttaataataataagttgaccttttttggttatatattatatagagaggcaatgttgagttaatcttagagattatggcactaggt |
214 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49290116 |
ctcacacaaatctacttaataataataagttgaccttttttggttatatat-atagagagaggcaatgttgagttaatcttagagattatggcactaggt |
49290214 |
T |
|
| Q |
215 |
ataattaattagtctaacttaattgatagatttggggtgccacttaaggacaaggatcttctacctttgctgcaataatgtgcagcaggtggattcaagt |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49290215 |
ataattaattagtctaacttaattgatagatttggggtgccacttaaggacaaggatcttctacctttgctgcaataatgtgcagcaggtggattcaagt |
49290314 |
T |
|
| Q |
315 |
atattgtttagccttcttttttaagggttaaatgtaatgttatcttttttataagtattgataataaatta-----aatactacatggttccacaagtta |
409 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
49290315 |
ctattgtttagccttcttttttaagggttaaatgtaatgttatcttttttataagtattgataataaattaaagggaatactacatggttccacaagtta |
49290414 |
T |
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| Q |
410 |
caaccttttt |
419 |
Q |
| |
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| || ||||| |
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| T |
49290415 |
ctacattttt |
49290424 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 18 - 109
Target Start/End: Original strand, 49303697 - 49303788
Alignment:
| Q |
18 |
gttggtggagccaatcaagttatgagtcttcatcttaaccgttccttaattccaatgcttaaaaaagctggtgctctttggctttaatctca |
109 |
Q |
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| T |
49303697 |
gttggtggagccaatcaagttatgagtcttcatcttaaccgttccttaattccaatgcttaaaaaagctggtgctctttggctttaatctca |
49303788 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 319 - 355
Target Start/End: Original strand, 49303986 - 49304022
Alignment:
| Q |
319 |
tgtttagccttcttttttaagggttaaatgtaatgtt |
355 |
Q |
| |
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|||||||||||||||||| ||||||||||||||||| |
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| T |
49303986 |
tgtttagccttcttttttcggggttaaatgtaatgtt |
49304022 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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