View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13049_low_1 (Length: 707)
Name: NF13049_low_1
Description: NF13049
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13049_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 374; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 21 - 518
Target Start/End: Complemental strand, 42287202 - 42286705
Alignment:
| Q |
21 |
agtgcttattatggacaaatagaaaaatgagcagtaattactaagtgcataatttagtcaaatatgaattcttttgattaagatcccgccggcagaaagc |
120 |
Q |
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| T |
42287202 |
agtgcttattatggacaaatagaaaaatgagcagtaattactaagtgcataatttagtcaaatatgaattcttttgattaagatcccgccggcagaaagc |
42287103 |
T |
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| Q |
121 |
tcacataagctggatcataatccaatttgattgattacttaacaatataatatggacctttactaagagggctcactttctggctgttatgttttcttaa |
220 |
Q |
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|||| ||||||||||||||||||| || ||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42287102 |
tcaccaaagctggatcataatccaaatttattgattccttaaca--ataatatggacctttactaagagggctcactttctggctgttatgttttcttaa |
42287005 |
T |
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| Q |
221 |
tgcttaaacatcctacgtggcatgtacatagtttgatatcatgggacacc--------acaactgatacattcacaatccaaaccctttaatcgaattcc |
312 |
Q |
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| T |
42287004 |
tgcttaaacatcctacgtggcatgtacatagtttgatatcatgggacaccactatattacaactgatacattcacaatccaaaccctttaatcgaattcc |
42286905 |
T |
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| Q |
313 |
tattttcacatacatgtgtaccataattatttttgcctatacatgtaccataattatctatccnnnnnnnnnnnncatacatgtaccataattggacgaa |
412 |
Q |
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| T |
42286904 |
tattttcacatacatgtgtaccataattatttttg-gtataca--taccataattatctatcc---aaaaaaaaacatacatgtaccataattggacaaa |
42286811 |
T |
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| Q |
413 |
gtctaaaccatgtaaaacttgaagacttaaagatgaagcaattaaaaaggtgagtgctctcttgagctcataaccctttagtattttctcaaacattgtc |
512 |
Q |
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| T |
42286810 |
gtctaaaccatgtaaaacttgaagacttaaagatgaagcaatgaaaaaggtgagtgctctcttgagctcataaccctttagtattttctcaaacattgtc |
42286711 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 556 - 703
Target Start/End: Complemental strand, 42286667 - 42286521
Alignment:
| Q |
556 |
tgtgaccaaactttatcccacctaaaccacctttaattgccaatacctagnnnnnnnnnnnncattgtccccacttcactatactcaactnnnnnnnnng |
655 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||| | |
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| T |
42286667 |
tgtgaccaaactttatcccacctaaaccacctttaattgccaatacctagaaaaataaaaaacattgtccccacttcactataatcaact-aaaaaaaag |
42286569 |
T |
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| Q |
656 |
cttctttcttagaataaatatacatttcatcccttatctctgctcctc |
703 |
Q |
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| T |
42286568 |
cttctttcttagaataaatatacatttcatcccttatctcttctcctc |
42286521 |
T |
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