View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13049_low_10 (Length: 423)
Name: NF13049_low_10
Description: NF13049
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13049_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 379; Significance: 0; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 12 - 406
Target Start/End: Original strand, 4346701 - 4347094
Alignment:
| Q |
12 |
atgaatgttattgttggtggtgatgaaaatgaatgttcttccaagaggatttctcctcaagtagagtccacagatgattctaatcaaagacaaaaaagaa |
111 |
Q |
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| T |
4346701 |
atgaatgttattgttggtggtgatgaaaatgaatgctcttccaagaggatttctcctcaagtagagtccacagatgattctaatcaaagacaaaaaagaa |
4346800 |
T |
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| Q |
112 |
gaaagcaatagtggagaaggctttccaaatattgtagagaaggctttccaaatgcaaacaatcgcagcaatcccagtacgcttctagaagaatttctctg |
211 |
Q |
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| T |
4346801 |
gaaagcaatagtggagaaggctttccaaat-ttgtagagaaggctttccaaatgcaaacaatcgcagcaatcccagtacgcttctagaagaatttctctg |
4346899 |
T |
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| Q |
212 |
tgactatgtgagtctaagacatggtttaaattatcccaatcaagtcgctagttggctcttcaatgtattcttataagtgtgtgcctatagagtttacttt |
311 |
Q |
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| T |
4346900 |
tgactatgtgagtctaagacatggtttaaattatcccaatcaagtcgctagttggctcttcaatgtattcttataagtgtgtgcctatagagtttacttt |
4346999 |
T |
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| Q |
312 |
tcctttgatttaggagacaacagtattgcattaagtaaataaatgtcaggcaagaactacattatcctgtcatatacatgccataggaaagaact |
406 |
Q |
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| T |
4347000 |
tcctttgatttaggagacaacagtattgcattaagtaaataaatgtcaggcaaaaactacattatcctgtcatatacatgccataggaaagaact |
4347094 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 147 - 316
Target Start/End: Original strand, 4363264 - 4363432
Alignment:
| Q |
147 |
agagaaggctttccaaatgcaaacaatcgcagcaatcccagtacgcttctagaagaatttctctgtgactatgtgagtctaagacatggtttaaattatc |
246 |
Q |
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| T |
4363264 |
agagaaggttttccaaatgcaaacaatcgcagcaatctcagtacacttcaagaagaattcctctgtgattatgtgagtctaagacatgttttaaattctc |
4363363 |
T |
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| Q |
247 |
ccaatcaagtcgctagttggctcttcaatgtattcttataagtgtgtgcctatagagtttacttttcctt |
316 |
Q |
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| T |
4363364 |
ccaatcaagtcactagtttgatctttaatgtattcttat-agtgtgtgcgtatagagtttagttttcctt |
4363432 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 14 - 128
Target Start/End: Original strand, 4362892 - 4363006
Alignment:
| Q |
14 |
gaatgttattgttggtggtgatgaaaatgaatgttcttccaagaggatttctcctcaagtagagtccacagatgattctaatcaaagacaaaaaagaaga |
113 |
Q |
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| T |
4362892 |
gaatgttattgttggtggtgatgaaaatgaatgctcttccaagattgtttctcctcaagtagagtccacagatgattctaatcaaagacaaaaaagaaga |
4362991 |
T |
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| Q |
114 |
aagcaatagtggaga |
128 |
Q |
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| T |
4362992 |
aaacactggtggaga |
4363006 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 312 - 370
Target Start/End: Original strand, 4363463 - 4363521
Alignment:
| Q |
312 |
tcctttgatttaggagacaacagtattgcattaagtaaataaatgtcaggcaagaacta |
370 |
Q |
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| T |
4363463 |
tcctttgatgtaggagacaacaatattgcattaagtaaataaatgtcaggaaagaacta |
4363521 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 22 - 115
Target Start/End: Complemental strand, 4122594 - 4122501
Alignment:
| Q |
22 |
ttgttggtggtgatgaaaatgaatgttcttccaagaggatttctcctcaagtagagtccacagatgattctaatcaaagacaaaaaagaagaaa |
115 |
Q |
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| T |
4122594 |
ttgttggtggtgctgaaaatgaatgcgctgccaagagggtctctctgcaagtagagcacatagatgatactaaacaaagacaaaaaagaagaaa |
4122501 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 28 - 115
Target Start/End: Original strand, 4337250 - 4337337
Alignment:
| Q |
28 |
gtggtgatgaaaatgaatgttcttccaagaggatttctcctcaagtagagtccacagatgattctaatcaaagacaaaaaagaagaaa |
115 |
Q |
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| T |
4337250 |
gtggtgataaaaatgaatgtgctgccaagaggatctctcttcaagtagagcctgcagatgatttaaaacaaaaacagaaaagaagaaa |
4337337 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 30 - 115
Target Start/End: Complemental strand, 4319238 - 4319153
Alignment:
| Q |
30 |
ggtgatgaaaatgaatgttcttccaagaggatttctcctcaagtagagtccacagatgattctaatcaaagacaaaaaagaagaaa |
115 |
Q |
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| T |
4319238 |
ggtgatgaaaatgaatgtgctgccatgaggatctctcgccaagtagagcctacagatgattttgaacaaaaacagaaaagaagaaa |
4319153 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 28 - 117
Target Start/End: Complemental strand, 4132571 - 4132482
Alignment:
| Q |
28 |
gtggtgatgaaaatgaatgttcttccaagaggatttctcctcaagtagagtccacagatgattctaatcaaagacaaaaaagaagaaagc |
117 |
Q |
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| T |
4132571 |
gtggtgatgaaaatgaatgtgctgccaagaggttcactcttcaagtagagcccgcaggtcattttaaacaaaaacagagaagaagaaagc |
4132482 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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