View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13049_low_12 (Length: 397)
Name: NF13049_low_12
Description: NF13049
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13049_low_12 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 175; Significance: 4e-94; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 209 - 391
Target Start/End: Complemental strand, 40952190 - 40952008
Alignment:
| Q |
209 |
atatatatattaaaatacattaattttaggaaaaactcctctaaacaaaacagagttctttatttattttttgaaatcatataatcagagaaaatttatt |
308 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
40952190 |
atatatatattaaaatacattaattttaggaaaaaatcctctaaacaaaacagagttctttatttattttttgaaatcatataatcatagaaaatttatt |
40952091 |
T |
|
| Q |
309 |
tttaattgtaagtgatttcaggaaaaataaaattttcatagtgttagaacaatgttctagaactaaatggcctattctgtgtt |
391 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40952090 |
tttaattgtaagtgatttcaggaaaaataaaattttcatagtgttagaacaatgttctagaactaaatggcctattctgtgtt |
40952008 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 1 - 152
Target Start/End: Complemental strand, 40952340 - 40952189
Alignment:
| Q |
1 |
taagttgataaaactcgtataaagatgtggtgttcctaccacttgtacaactgcttaaaatccaatgtgacaatcctatgaaattataggtatctcatcg |
100 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
40952340 |
taagttgataaaactcatataaagatgtggtgttcgaaccacttgtacaactgcttaaaattcaatgtgacaatcctatgaaattataggtgtctcatcg |
40952241 |
T |
|
| Q |
101 |
tgatccaatagtaaggagactcacatcgtgatccaatggatcatatatatat |
152 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40952240 |
tgatccaatagtagggagactcacatcgtgatccaatggatcatatatatat |
40952189 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University