View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13049_low_14 (Length: 371)
Name: NF13049_low_14
Description: NF13049
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13049_low_14 |
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Alignment Details
Target: chr2 (Bit Score: 311; Significance: 1e-175; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 18 - 361
Target Start/End: Original strand, 38310756 - 38311099
Alignment:
| Q |
18 |
attgcttgcatagtaagcacatgtatttgttaggtagcataaatgcagcctcaatttgcacttacatttgtgtgctatccccatttttactatttaatta |
117 |
Q |
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| T |
38310756 |
attgcttgcatagtaagcacatgtatttgttaggtagcataaatgcagcctcaatttgcacttacatttgtgtgctatcaccatttttactatttaatta |
38310855 |
T |
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| Q |
118 |
atgttcatgtgctacctagttcgcataataaatttagcaaccaaagctttgaatgtgactgccattaataccttctcttgcatagtatacttgtaggctt |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38310856 |
atgttcatgtgctacctagttcgcataataaatttagcaaccaaagctttgaatgtgactgccattaataccttctcttgcatagtatacttgtaggctt |
38310955 |
T |
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| Q |
218 |
aactaatatactcctagtatttttgtatggtaccacnnnnnnnttaatattttcttatagaagcattccataccttatacctagatatactttaccatca |
317 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||| ||||||||||||||||||| |
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| T |
38310956 |
aactaatatactcctagtatttttgtatggtaccacaaaaaaattaatattttcttatagaggcattccataccttatacgtagatatactttaccatca |
38311055 |
T |
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| Q |
318 |
taaggtagatatctcgagtcttataagcaaaatttcggattcat |
361 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38311056 |
taaggtagatatctcgagtcttataagcaaaatttcggattcat |
38311099 |
T |
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