View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13049_low_15 (Length: 363)
Name: NF13049_low_15
Description: NF13049
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13049_low_15 |
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Alignment Details
Target: chr3 (Bit Score: 324; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 1 - 349
Target Start/End: Original strand, 48684283 - 48684631
Alignment:
| Q |
1 |
tgctaatcaattcttgcacccctaaatattattaaaaagagatcagcaaaactcataattggaaagactatttttatttcgaaaaaagtcttcactaatt |
100 |
Q |
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| T |
48684283 |
tgctaatcaattcttgcacccctaaatattattaaaaagagatcagcaaaactcataattggaaagactatttttatttcgaaaaaagtcttcactaatt |
48684382 |
T |
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| Q |
101 |
caaatgatacacatcattgtcattatagattagtcctgattacttaagggtggcaacacctttnnnnnnncacatgtaaaacaaggtattaatttaaatt |
200 |
Q |
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| T |
48684383 |
caaatgatacacatcattgtcattatagattagtcctgattacttaagggtggcaacacctttaaaaaaacacatgtaaaacaaggtattaatttaaatt |
48684482 |
T |
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| Q |
201 |
gactgaaccaaaagtttggatcttctctagaactaaaagagataatatctccaataatgaagagaatccaaattagataagcaaagacagagggtactta |
300 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48684483 |
gactgaaccaaaagtttggatcttctctaggactaaaagagataatatctccaataatgaagagaatccaaattagataagcaaagacagagggtactta |
48684582 |
T |
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| Q |
301 |
tggtatttaacaattattgatgttttggtatcttgtctgtgagtattat |
349 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48684583 |
tggtatttaacaattattgatgttttggtatcttgtctgtgagtattat |
48684631 |
T |
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