View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13049_low_16 (Length: 348)

Name: NF13049_low_16
Description: NF13049
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13049_low_16
NF13049_low_16
[»] chr1 (9 HSPs)
chr1 (12-331)||(50182775-50183095)
chr1 (135-282)||(39501112-39501259)
chr1 (137-292)||(33978131-33978286)
chr1 (179-276)||(28037638-28037735)
chr1 (127-198)||(12458725-12458796)
chr1 (179-275)||(14650987-14651080)
chr1 (179-275)||(14660778-14660871)
chr1 (173-229)||(7386704-7386760)
chr1 (260-300)||(27466779-27466819)
[»] chr3 (6 HSPs)
chr3 (125-329)||(31574789-31574993)
chr3 (135-329)||(2497054-2497244)
chr3 (126-300)||(4741528-4741702)
chr3 (179-276)||(54548318-54548415)
chr3 (179-276)||(52964141-52964238)
chr3 (173-229)||(29210843-29210899)
[»] chr2 (5 HSPs)
chr2 (127-332)||(14785944-14786148)
chr2 (121-281)||(10748038-10748198)
chr2 (172-274)||(36756940-36757042)
chr2 (135-300)||(37670656-37670821)
chr2 (174-277)||(16468348-16468451)
[»] chr7 (6 HSPs)
chr7 (135-329)||(41147694-41147888)
chr7 (135-329)||(12350683-12350877)
chr7 (121-300)||(30305265-30305444)
chr7 (138-292)||(513829-513983)
chr7 (173-283)||(43970028-43970138)
chr7 (173-276)||(41605361-41605464)
[»] chr5 (7 HSPs)
chr5 (135-329)||(23151209-23151403)
chr5 (135-329)||(28499116-28499310)
chr5 (174-283)||(13020906-13021015)
chr5 (174-283)||(13092430-13092539)
chr5 (121-189)||(34893753-34893821)
chr5 (179-276)||(10813136-10813233)
chr5 (121-277)||(7274525-7274681)
[»] chr4 (5 HSPs)
chr4 (135-329)||(32499486-32499680)
chr4 (121-281)||(42327835-42327995)
chr4 (121-319)||(1480981-1481177)
chr4 (135-273)||(54421356-54421494)
chr4 (129-229)||(43733950-43734050)
[»] scaffold0067 (1 HSPs)
scaffold0067 (135-329)||(10931-11125)
[»] chr8 (4 HSPs)
chr8 (121-282)||(34752622-34752783)
chr8 (121-281)||(9180663-9180823)
chr8 (125-282)||(11629487-11629644)
chr8 (125-229)||(10394672-10394776)
[»] chr6 (2 HSPs)
chr6 (121-281)||(10158887-10159047)
chr6 (127-198)||(16863312-16863383)
[»] scaffold0996 (1 HSPs)
scaffold0996 (136-292)||(1496-1652)
[»] scaffold0007 (1 HSPs)
scaffold0007 (205-300)||(188397-188492)


Alignment Details
Target: chr1 (Bit Score: 217; Significance: 1e-119; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 12 - 331
Target Start/End: Complemental strand, 50183095 - 50182775
Alignment:
Q  12 atgagatgaagtgcacaaaggtttaagcatacgatgaatttggagagcatatcttattgaaaatccggaaaattttatctaaatgaatttggagagcnnn 111  Q
    |||| |||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||| | ||||||||||||||||||||||||||||||       
T  50183095 atgacatgaagtgcacaaaagtttaagcatacgatgaatttggagagcttatcttattgaaaatacagaaaattttatctaaatgaatttggagagcttt 50182996  T
Q  112 nnnnn---agcaaaaggcaaagttacttcatttcattcaaaattaaggaatacaaagtaggcattacatgataaaaaatatgggggctaggattagatag 208  Q
            |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||    
T  50182995 ttttttttagcaaa-ggcaaagttacttcatttcattcaaaattaaggaatacaaagtaggcattacatgatgaaaaatatgggg-ctaggattagatag 50182898  T
Q  209 tgatgccctagcaatactatgggcaacaccatttgcttacctcctaatttacgacactacaaagtcgggtctatcgagtaagagacttctacttttgatt 308  Q
    |||||||||||||||||||||||||||||||||||||| |||| |||| |||| |||||||||||||||||||||||||||||||||| ||| || ||||    
T  50182897 tgatgccctagcaatactatgggcaacaccatttgcttgcctcttaatatacggcactacaaagtcgggtctatcgagtaagagacttttacattggatt 50182798  T
Q  309 acaagatcaccaaattcattgct 331  Q
    |||||||||||||||||||||||    
T  50182797 acaagatcaccaaattcattgct 50182775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 135 - 282
Target Start/End: Complemental strand, 39501259 - 39501112
Alignment:
Q  135 ttcatttcattcaaaattaaggaatacaaagtaggcattacatgataaaaaatatgggggctaggattagatagtgatgccctagcaatactatgggcaa 234  Q
    ||||||||||| |||| ||| | ||||||||||||  ||||||||| ||| |||||| ||||||| | |||||||||||| |||||||||||||  ||||    
T  39501259 ttcatttcattaaaaactaacggatacaaagtaggtgttacatgatgaaagatatggaggctagggtgagatagtgatgctctagcaatactataagcaa 39501160  T
Q  235 caccatttgcttacctcctaatttacgacactacaaagtcgggtctat 282  Q
    | | |||||||| ||||||||  |||||||||||||||||||||||||    
T  39501159 ctctatttgcttgcctcctaacatacgacactacaaagtcgggtctat 39501112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 137 - 292
Target Start/End: Original strand, 33978131 - 33978286
Alignment:
Q  137 catttcattcaaaattaaggaatacaaagtaggcattacatgataaaaaatatgggggctaggattagatagtgatgccctagcaatactatgggcaaca 236  Q
    ||||||||||| ||||||||| ||||||||||    ||||  || |||||||||||||||||||| | |||  || || |||||||||||||| |||||     
T  33978131 catttcattcataattaaggagtacaaagtagaaggtacaacattaaaaatatgggggctaggatgacataaggaagctctagcaatactatgagcaacc 33978230  T
Q  237 ccatttgcttacctcctaatttacgacactacaaagtcgggtctatcgagtaagag 292  Q
    | ||| |||| ||||| ||  || ||||||||||||||||||| || ||| |||||    
T  33978231 ctattagcttgcctccgaacatatgacactacaaagtcgggtcaattgagcaagag 33978286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 179 - 276
Target Start/End: Complemental strand, 28037735 - 28037638
Alignment:
Q  179 ataaaaaatatgggggctaggattagatagtgatgccctagcaatactatgggcaacaccatttgcttacctcctaatttacgacactacaaagtcgg 276  Q
    |||||||| |||||||||||||| |||||  || || ||||| |||||||| ||||| | |||  ||| ||||||||| |||||||||  ||||||||    
T  28037735 ataaaaaagatgggggctaggatgagataaagaagctctagctatactatgagcaaccctattaacttgcctcctaatatacgacactttaaagtcgg 28037638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 127 - 198
Target Start/End: Original strand, 12458725 - 12458796
Alignment:
Q  127 aaagttacttcatttcattcaaaattaaggaatacaaagtaggcattacatgataaaaaatatgggggctag 198  Q
    ||||||| | ||||||||||| ||| || |||||||||||| ||  ||||| ||| ||||||||||||||||    
T  12458725 aaagttaatgcatttcattcataatcaaagaatacaaagtaagcggtacattatagaaaatatgggggctag 12458796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 179 - 275
Target Start/End: Complemental strand, 14651080 - 14650987
Alignment:
Q  179 ataaaaaatatgggggctaggattagatagtgatgccctagcaatactatgggcaacaccatttgcttacctcctaatttacgacactacaaagtcg 275  Q
    |||||| |||||||||||||||| |||||   |||| ||||| || ||||| |||||   |||||||| ||||| |||  |||||||||||||||||    
T  14651080 ataaaagatatgggggctaggatgagata---atgctctagctatgctatgtgcaaccttatttgcttgcctccgaatgaacgacactacaaagtcg 14650987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 179 - 275
Target Start/End: Complemental strand, 14660871 - 14660778
Alignment:
Q  179 ataaaaaatatgggggctaggattagatagtgatgccctagcaatactatgggcaacaccatttgcttacctcctaatttacgacactacaaagtcg 275  Q
    |||||| |||||||||||||||| |||||   |||| ||||| || ||||| |||||   |||||||| ||||| |||  |||||||||||||||||    
T  14660871 ataaaagatatgggggctaggatgagata---atgctctagctatgctatgtgcaaccttatttgcttgcctccgaatgaacgacactacaaagtcg 14660778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 173 - 229
Target Start/End: Complemental strand, 7386760 - 7386704
Alignment:
Q  173 tacatgataaaaaatatgggggctaggattagatagtgatgccctagcaatactatg 229  Q
    ||||| |||||||| ||||||||||||||||||||  || || |||||||| |||||    
T  7386760 tacatcataaaaaacatgggggctaggattagataaagaggctctagcaatgctatg 7386704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 260 - 300
Target Start/End: Complemental strand, 27466819 - 27466779
Alignment:
Q  260 cgacactacaaagtcgggtctatcgagtaagagacttctac 300  Q
    ||||||||||||||||||| |||  ||||||||||||||||    
T  27466819 cgacactacaaagtcgggtttattaagtaagagacttctac 27466779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 149; Significance: 1e-78; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 125 - 329
Target Start/End: Complemental strand, 31574993 - 31574789
Alignment:
Q  125 gcaaagttacttcatttcattcaaaattaaggaatacaaagtaggcattacatgataaaaaatatgggggctaggattagatagtgatgccctagcaata 224  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||    
T  31574993 gcaaagttacttcatttcattcaaaattaaggaatactaagtaggcattacatgatgaaaaatatggcggctaggattagatagtgatgccctagcaata 31574894  T
Q  225 ctatgggcaacaccatttgcttacctcctaatttacgacactacaaagtcgggtctatcgagtaagagacttctacttttgattacaagatcaccaaatt 324  Q
    ||| | |||||||||||| ||| ||||||||| ||||||||| ||||||||| ||||||||||||||||||||||| || |||||||| ||||||||||     
T  31574893 ctacgagcaacaccatttacttgcctcctaatatacgacactgcaaagtcggatctatcgagtaagagacttctacattggattacaaaatcaccaaatg 31574794  T
Q  325 cattg 329  Q
    |||||    
T  31574793 cattg 31574789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 135 - 329
Target Start/End: Original strand, 2497054 - 2497244
Alignment:
Q  135 ttcatttcattcaaaattaaggaatacaaagtaggcattacatgataaaaaatatgggggctaggattagatagtgatgccctagcaatactatgggcaa 234  Q
    ||||||||||||| |||||||   ||||||||||||| |||||||| |||||||||||||||||||| |||||| || || | |||||||||||| ||||    
T  2497054 ttcatttcattcataattaagcggtacaaagtaggcaatacatgatgaaaaatatgggggctaggatgagatagcgaagctcgagcaatactatgagcaa 2497153  T
Q  235 caccatttgcttacctcctaatttacgacactacaaagtcgggtctatcgagtaagagacttctacttttgattacaagatcaccaaattcattg 329  Q
    ||| |||||||| ||    ||  ||||||||| ||||||||||| |||| |||||||||||||||| || | |||||||||| ||||| ||||||    
T  2497154 cactatttgcttgcc----aacatacgacactgcaaagtcgggtttatcaagtaagagacttctacattgggttacaagatctccaaactcattg 2497244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 126 - 300
Target Start/End: Original strand, 4741528 - 4741702
Alignment:
Q  126 caaagttacttcatttcattcaaaattaaggaatacaaagtaggcattacatgataaaaaatatgggggctaggattagatagtgatgccctagcaatac 225  Q
    |||||||| ||||||||||||| ||||||  | || ||||||| |  ||||| | ||||||||||||||||||| || ||||  ||||| ||||||||||    
T  4741528 caaagttaattcatttcattcataattaaaaagtataaagtagtcggtacatcacaaaaaatatgggggctagggttggataaagatgctctagcaatac 4741627  T
Q  226 tatgggcaacaccatttgcttacctcctaatttacgacactacaaagtcgggtctatcgagtaagagacttctac 300  Q
    |||| |||||   ||| || | ||||||||  |||||||| ||||||| |  ||||   ||||||||||||||||    
T  4741628 tatgagcaactttattagcgtgcctcctaacatacgacacaacaaagtagtttctagaaagtaagagacttctac 4741702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 179 - 276
Target Start/End: Original strand, 54548318 - 54548415
Alignment:
Q  179 ataaaaaatatgggggctaggattagatagtgatgccctagcaatactatgggcaacaccatttgcttacctcctaatttacgacactacaaagtcgg 276  Q
    |||||||| |||||||||||||| |||||  || || ||||| |||||||| ||||| | |||  ||| ||||||||| |||||||||  ||||||||    
T  54548318 ataaaaaagatgggggctaggatgagataaggaagctctagctatactatgagcaactctattaacttgcctcctaatatacgacactttaaagtcgg 54548415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 179 - 276
Target Start/End: Original strand, 52964141 - 52964238
Alignment:
Q  179 ataaaaaatatgggggctaggattagatagtgatgccctagcaatactatgggcaacaccatttgcttacctcctaatttacgacactacaaagtcgg 276  Q
    |||||||| |||||||||||||| |||||  || |  ||||| |||||||| ||||| | |||  ||| ||||||||| |||||||||  ||||||||    
T  52964141 ataaaaaagatgggggctaggatgagataaggaagatctagctatactatgagcaaccctattaacttgcctcctaatatacgacactttaaagtcgg 52964238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 173 - 229
Target Start/End: Original strand, 29210843 - 29210899
Alignment:
Q  173 tacatgataaaaaatatgggggctaggattagatagtgatgccctagcaatactatg 229  Q
    ||||| |||||||||||||||| ||||||||||||  || || |||||||| |||||    
T  29210843 tacatcataaaaaatatgggggttaggattagataaagaggctctagcaatgctatg 29210899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 106; Significance: 5e-53; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 127 - 332
Target Start/End: Complemental strand, 14786148 - 14785944
Alignment:
Q  127 aaagttacttcatttcattcaaaattaaggaatacaaagtaggcattacatgataaaaaatatgggggctaggattagatagtgatgccctagcaatact 226  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||| ||||| ||||||| ||||| || ||| |||||||||||| |||||||||||    
T  14786148 aaagttacttcatttcattcaaaattaaggaatacaaagtaagcatta-atgatgaaaaataagggggttaagatgagatagtgatgctctagcaatact 14786050  T
Q  227 atgggcaacaccatttgcttacctcctaatttacgacactacaaagtcgggtctatcgagtaagagacttctacttttgattacaagatcaccaaattca 326  Q
    ||| |||||||||||||||| ||||||||  ||||||| |  ||| | ||||||||| | ||| |||||||||| || ||||||||||||||| || |||    
T  14786049 atgagcaacaccatttgcttgcctcctaacatacgacattgaaaaattgggtctatcaaataaaagacttctacattggattacaagatcacctaactca 14785950  T
Q  327 ttgctg 332  Q
    ||||||    
T  14785949 ttgctg 14785944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 121 - 281
Target Start/End: Complemental strand, 10748198 - 10748038
Alignment:
Q  121 aaaggcaaagttacttcatttcattcaaaattaaggaatacaaagtaggcattacatgataaaaaatatgggggctaggattagatagtgatgccctagc 220  Q
    ||||||||||||| ||||||||||| |||||||| | ||||||||||||  ||||||||| ||| ||||| |||||||| | |||||||||||| |||||    
T  10748198 aaaggcaaagttagttcatttcattaaaaattaacggatacaaagtaggtgttacatgatgaaagatatgagggctagggtgagatagtgatgctctagc 10748099  T
Q  221 aatactatgggcaacaccatttgcttacctcctaatttacgacactacaaagtcgggtcta 281  Q
    |||| |||| ||||| | |||||||| ||||||||  ||||||||||||||||||||||||    
T  10748098 aatattatgagcaactctatttgcttgcctcctaacatacgacactacaaagtcgggtcta 10748038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 172 - 274
Target Start/End: Original strand, 36756940 - 36757042
Alignment:
Q  172 ttacatgataaaaaatatgggggctaggattagatagtgatgccctagcaatactatgggcaacaccatttgcttacctcctaatttacgacactacaaa 271  Q
    |||||||||| |||||||||||||||||||  ||||  || || |||||||||||||| |||||   ||| |||| ||||| |||  |||||||||||||    
T  36756940 ttacatgatagaaaatatgggggctaggatgtgataaggaagctctagcaatactatgagcaactttattagcttgcctccgaataaacgacactacaaa 36757039  T
Q  272 gtc 274  Q
    |||    
T  36757040 gtc 36757042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 135 - 300
Target Start/End: Original strand, 37670656 - 37670821
Alignment:
Q  135 ttcatttcattcaaaattaaggaatacaaagtaggcattacatgataaaaaatatgggggctaggattagatagtgatgccctagcaatactatgggcaa 234  Q
    |||||||||| || |||||| |  |||||||||| |  ||||| ||||||||||||||||||||| |  ||||  ||||| ||||||||||||||  |||    
T  37670656 ttcatttcatccataattaaagggtacaaagtagtcggtacatcataaaaaatatgggggctagggtgggataaagatgctctagcaatactatgaacaa 37670755  T
Q  235 caccatttgcttacctcctaatttacgacactacaaagtcgggtctatcgagtaagagacttctac 300  Q
    |   ||||| || ||| ||||  |||||||| |||||||||  ||||   |||| |||||||||||    
T  37670756 ctttatttgtttgccttctaacatacgacacaacaaagtcgtttctagaaagtacgagacttctac 37670821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 174 - 277
Target Start/End: Original strand, 16468348 - 16468451
Alignment:
Q  174 acatgataaaaaatatgggggctaggattagatagtgatgccctagcaatactatgggcaacaccatttgcttacctcctaatttacgacactacaaagt 273  Q
    |||| |||||| | ||| ||||||||||||||||| |  || ||||||||  |||| || ||||  ||||||||||||||||   ||||||||||| |||    
T  16468348 acatcataaaagacatgagggctaggattagatagagcagctctagcaatgttatgagctacactgtttgcttacctcctaacaaacgacactacatagt 16468447  T
Q  274 cggg 277  Q
    ||||    
T  16468448 cggg 16468451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 95; Significance: 2e-46; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 135 - 329
Target Start/End: Complemental strand, 41147888 - 41147694
Alignment:
Q  135 ttcatttcattcaaaattaaggaatacaaagtaggcattacatgataaaaaatatgggggctaggattagatagtgatgccctagcaatactatgggcaa 234  Q
    ||||||||||||| ||||| |   ||||||||||||| |||||||| |||||||||||||||||||| |||||| || || | |||||||||||| ||||    
T  41147888 ttcatttcattcataattaggcggtacaaagtaggcaatacatgatgaaaaatatgggggctaggatgagatagcgaagctcgagcaatactatgagcaa 41147789  T
Q  235 caccatttgcttacctcctaatttacgacactacaaagtcgggtctatcgagtaagagacttctacttttgattacaagatcaccaaattcattg 329  Q
    ||| |||||||| ||||||||  ||||||||| ||||||||||| |||| |||||||||||||||| || | |||||||||| ||||| ||||||    
T  41147788 cactatttgcttgcctcctaacatacgacactgcaaagtcgggtttatcaagtaagagacttctacattgggttacaagatctccaaactcattg 41147694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 135 - 329
Target Start/End: Original strand, 12350683 - 12350877
Alignment:
Q  135 ttcatttcattcaaaattaaggaatacaaagtaggcattacatgataaaaaatatgggggctaggattagatagtgatgccctagcaatactatgggcaa 234  Q
    ||||||||||||||||||||    ||||||||||||| |||||||| ||||||||||||| |||||| |||||| || || | |||||||||||| ||||    
T  12350683 ttcatttcattcaaaattaaatggtacaaagtaggcaatacatgatgaaaaatatgggggataggatgagatagcgaagctcgagcaatactatgagcaa 12350782  T
Q  235 caccatttgcttacctcctaatttacgacactacaaagtcgggtctatcgagtaagagacttctacttttgattacaagatcaccaaattcattg 329  Q
    ||  |||||||| ||||||||  ||||||||| ||||||||||| |||| ||||| |||||||||| || | |||||||||| ||||| ||||||    
T  12350783 caatatttgcttgcctcctaacatacgacactgcaaagtcgggtttatcaagtaatagacttctacattgggttacaagatctccaaactcattg 12350877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 121 - 300
Target Start/End: Original strand, 30305265 - 30305444
Alignment:
Q  121 aaaggcaaagttacttcatttcattcaaaattaaggaatacaaagtaggcattacatgataaaaaatatgggggctaggattagatagtgatgccctagc 220  Q
    |||||| |||||| ||| |||||| |||||| || | ||||||||||| |  |||||||  |||||||||||| ||||| | |||||||||||   ||||    
T  30305265 aaaggcgaagttagttcctttcatacaaaatcaacggatacaaagtagacgatacatgacgaaaaatatggggtctagggtgagatagtgatgttttagc 30305364  T
Q  221 aatactatgggcaacaccatttgcttacctcctaatttacgacactacaaagtcgggtctatcgagtaagagacttctac 300  Q
    ||||||||| ||||  | ||||| || ||||| ||  |||||| |||||||||||   |||| |||||||||||||||||    
T  30305365 aatactatgagcaattctatttgtttgcctccaaacatacgactctacaaagtcgaaactattgagtaagagacttctac 30305444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 138 - 292
Target Start/End: Complemental strand, 513983 - 513829
Alignment:
Q  138 atttcattcaaaattaaggaatacaaagtaggcattacatgataaaaaatatgggggctaggattagatagtgatgccctagcaatactatgggcaacac 237  Q
    |||||||||  ||||||||| ||||||||||    ||||  || |||||||||| || |||||| | |||  || || |||||||||||||| ||||| |    
T  513983 atttcattcgtaattaaggagtacaaagtagaaggtacaacattaaaaatatggaggttaggatgacataaggaagctctagcaatactatgagcaaccc 513884  T
Q  238 catttgcttacctcctaatttacgacactacaaagtcgggtctatcgagtaagag 292  Q
     ||| |||| ||||| ||  ||||||||||||||||||||||||| ||| |||||    
T  513883 tattagcttgcctccaaacatacgacactacaaagtcgggtctattgagcaagag 513829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 173 - 283
Target Start/End: Complemental strand, 43970138 - 43970028
Alignment:
Q  173 tacatgataaaaaatatgggggctaggattagatagtgatgccctagcaatactatgggcaacaccatttgcttacctcctaatttacgacactacaaag 272  Q
    ||||| ||| |||||||||||||||||||| ||||  || || |||||||||||||| |||||   |||||||| ||| | ||  || ||||||| ||||    
T  43970138 tacatcatagaaaatatgggggctaggattggataaggacgctctagcaatactatgagcaaccttatttgcttgcctacgaacatatgacactataaag 43970039  T
Q  273 tcgggtctatc 283  Q
    |||||| ||||    
T  43970038 tcgggtttatc 43970028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 173 - 276
Target Start/End: Complemental strand, 41605464 - 41605361
Alignment:
Q  173 tacatgataaaaaatatgggggctaggattagatagtgatgccctagcaatactatgggcaacaccatttgcttacctcctaatttacgacactacaaag 272  Q
    ||||| |||||||||||||||| |  |||| ||||  || || |||||||||||||| |||||   |||||| ||||||  ||  |||||||||||||||    
T  41605464 tacattataaaaaatatgggggttgagattggataaggacgctctagcaatactatgagcaaccttatttgcctacctctaaacatacgacactacaaag 41605365  T
Q  273 tcgg 276  Q
    ||||    
T  41605364 tcgg 41605361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 95; Significance: 2e-46; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 135 - 329
Target Start/End: Complemental strand, 23151403 - 23151209
Alignment:
Q  135 ttcatttcattcaaaattaaggaatacaaagtaggcattacatgataaaaaatatgggggctaggattagatagtgatgccctagcaatactatgggcaa 234  Q
    ||||||||||||| ||||| |   ||||||||||||| |||||||| |||||||||||||||||||| |||||| || || | |||||||||||| ||||    
T  23151403 ttcatttcattcataattaggcggtacaaagtaggcaatacatgatgaaaaatatgggggctaggatgagatagcgaagctcgagcaatactatgagcaa 23151304  T
Q  235 caccatttgcttacctcctaatttacgacactacaaagtcgggtctatcgagtaagagacttctacttttgattacaagatcaccaaattcattg 329  Q
    ||| |||||||| ||||||||  ||||||||| ||||||||||| |||| |||||||||||||||| || | |||||||||| ||||| ||||||    
T  23151303 cactatttgcttgcctcctaacatacgacactgcaaagtcgggtttatcaagtaagagacttctacattgggttacaagatctccaaactcattg 23151209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 135 - 329
Target Start/End: Complemental strand, 28499310 - 28499116
Alignment:
Q  135 ttcatttcattcaaaattaaggaatacaaagtaggcattacatgataaaaaatatgggggctaggattagatagtgatgccctagcaatactatgggcaa 234  Q
    ||||||||||||| ||||||  | || |||||||||| |||||||| |||||||||||||||||||| |||||| || || | |||||||||||| ||||    
T  28499310 ttcatttcattcataattaaacagtataaagtaggcaatacatgatgaaaaatatgggggctaggatgagatagcgaagctcgagcaatactatgagcaa 28499211  T
Q  235 caccatttgcttacctcctaatttacgacactacaaagtcgggtctatcgagtaagagacttctacttttgattacaagatcaccaaattcattg 329  Q
    ||| |||||||| ||||||||  |||||||||  |||||| ||| |||| | |||||||||||||| || ||||| |||||| ||||| ||||||    
T  28499210 cactatttgcttgcctcctaacatacgacactgtaaagtcaggtttatcaaataagagacttctacattggattataagatctccaaactcattg 28499116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 174 - 283
Target Start/End: Original strand, 13020906 - 13021015
Alignment:
Q  174 acatgataaaaaatatgggggctaggattagatagtgatgccctagcaatactatgggcaacaccatttgcttacctcctaatttacgacactacaaagt 273  Q
    |||| ||| |||||||||||| ||||||| ||||  || || |||||||||||||  |||||   |||||||| ||||| ||  ||||||||||||||||    
T  13020906 acatcatagaaaatatgggggttaggattggataaggacgctctagcaatactataagcaaccttatttgcttgcctccgaacatacgacactacaaagt 13021005  T
Q  274 cgggtctatc 283  Q
    ||||| ||||    
T  13021006 cgggtttatc 13021015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 174 - 283
Target Start/End: Original strand, 13092430 - 13092539
Alignment:
Q  174 acatgataaaaaatatgggggctaggattagatagtgatgccctagcaatactatgggcaacaccatttgcttacctcctaatttacgacactacaaagt 273  Q
    |||| ||| |||||||||||| ||||||| ||||  || || |||||||||||||  |||||   |||||||| ||||| ||  ||||||||||||||||    
T  13092430 acatcatagaaaatatgggggttaggattggataacgacgctctagcaatactataagcaaccttatttgcttgcctccgaacatacgacactacaaagt 13092529  T
Q  274 cgggtctatc 283  Q
    ||||| ||||    
T  13092530 cgggtttatc 13092539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 121 - 189
Target Start/End: Original strand, 34893753 - 34893821
Alignment:
Q  121 aaaggcaaagttacttcatttcattcaaaattaaggaatacaaagtaggcattacatgataaaaaatat 189  Q
    ||||||| ||| | ||||||||||||||||||||    ||||||||||||| |||||||| ||||||||    
T  34893753 aaaggcagagtcaattcatttcattcaaaattaattggtacaaagtaggcaatacatgatgaaaaatat 34893821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 179 - 276
Target Start/End: Original strand, 10813136 - 10813233
Alignment:
Q  179 ataaaaaatatgggggctaggattagatagtgatgccctagcaatactatgggcaacaccatttgcttacctcctaatttacgacactacaaagtcgg 276  Q
    |||||||| |||||||||||||| |||||  || || ||||| |||||||| ||||| | ||| |||| ||||| ||| || ||||||  ||||||||    
T  10813136 ataaaaaagatgggggctaggatgagataaggaagctctagctatactatgagcaaccctattagcttgcctccgaatatatgacactttaaagtcgg 10813233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 121 - 277
Target Start/End: Complemental strand, 7274681 - 7274525
Alignment:
Q  121 aaaggcaaagttacttcatttcattcaaaattaaggaatacaaagtaggcattacatgataaaaaatatgggggctaggattagatagtgatgccctagc 220  Q
    ||||||||| ||||| ||||||||||| || ||  |||||||| ||||     |||| |||||| | ||||||||||||||  ||||| |   | || ||    
T  7274681 aaaggcaaaattactccatttcattcacaaatagagaatacaaggtagtaggaacatcataaaagacatgggggctaggatacgatagagcatctctcgc 7274582  T
Q  221 aatactatgggcaacaccatttgcttacctcctaatttacgacactacaaagtcggg 277  Q
    |||| |||| || |||| |||| ||| |||||||||  ||||||||||| |||||||    
T  7274581 aatattatgagccacactattttcttgcctcctaataaacgacactacatagtcggg 7274525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 95; Significance: 2e-46; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 135 - 329
Target Start/End: Complemental strand, 32499680 - 32499486
Alignment:
Q  135 ttcatttcattcaaaattaaggaatacaaagtaggcattacatgataaaaaatatgggggctaggattagatagtgatgccctagcaatactatgggcaa 234  Q
    ||||||||||||| ||||| |   ||||||||||||| |||||||| |||||||||||||||||||| |||||| || || | |||||||||||| ||||    
T  32499680 ttcatttcattcataattaggcggtacaaagtaggcaatacatgatgaaaaatatgggggctaggatgagatagcgaagctcgagcaatactatgagcaa 32499581  T
Q  235 caccatttgcttacctcctaatttacgacactacaaagtcgggtctatcgagtaagagacttctacttttgattacaagatcaccaaattcattg 329  Q
    ||| |||||||| ||||||||  ||||||||| ||||||||||| |||| |||||||||||||||| || | |||||||||| ||||| ||||||    
T  32499580 cactatttgcttgcctcctaacatacgacactgcaaagtcgggtttatcaagtaagagacttctacattgggttacaagatctccaaactcattg 32499486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 121 - 281
Target Start/End: Original strand, 42327835 - 42327995
Alignment:
Q  121 aaaggcaaagttacttcatttcattcaaaattaaggaatacaaagtaggcattacatgataaaaaatatgggggctaggattagatagtgatgccctagc 220  Q
    ||||||||||||| ||||||||||| |||||||| | ||||||||||||  ||||||||| ||| |||||||||||||| | |||||||||||| |||||    
T  42327835 aaaggcaaagttagttcatttcattaaaaattaacggatacaaagtaggtgttacatgatgaaagatatgggggctagggtgagatagtgatgctctagc 42327934  T
Q  221 aatactatgggcaacaccatttgcttacctcctaatttacgacactacaaagtcgggtcta 281  Q
    |||| |||| ||||| | |||||||| ||||||||  ||||||||||||||||||||||||    
T  42327935 aatattatgagcaactctatttgcttgcctcctaacatacgacactacaaagtcgggtcta 42327995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 121 - 319
Target Start/End: Complemental strand, 1481177 - 1480981
Alignment:
Q  121 aaaggcaaagttacttcatttcattcaaaattaaggaatacaaagtaggc---attacatgataaaaaatatgggggctaggattagatagtgatgccct 217  Q
    |||| |||||||| ||||||||||| ||||||||   ||| ||||| |||   |||||||||| ||| |||||||||||      |||||||||||| ||    
T  1481177 aaagacaaagttaattcatttcattaaaaattaacagatagaaagtcggccttattacatgatgaaagatatgggggctg-----agatagtgatgctct 1481083  T
Q  218 agcaatactatgggcaacaccatttgcttacctcctaatttacgacactacaaagtcgggtctatcgagtaagagacttctacttttgattacaagatca 317  Q
    | |||||||||| | ||| | |||||||| |||||||   |||||||||||||||| ||||||||  ||||  | |||||||| ||   |||||||||||    
T  1481082 aacaatactatgagtaactctatttgcttgcctcctatcatacgacactacaaagttgggtctattaagtagtaaacttctacattgagttacaagatca 1480983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 135 - 273
Target Start/End: Original strand, 54421356 - 54421494
Alignment:
Q  135 ttcatttcattcaaaattaaggaatacaaagtaggcattacatgataaaaaatatgggggctaggattagatagtgatgccctagcaatactatgggcaa 234  Q
    ||||| |||| |||||| || || ||||||||||   |||||||||| |||||||||||||||||||  ||||  || || ||||||||||||||  |||    
T  54421356 ttcatatcatccaaaatcaaagagtacaaagtagttgttacatgatagaaaatatgggggctaggatgtgataaggaagctctagcaatactatgaccaa 54421455  T
Q  235 caccatttgcttacctcctaatttacgacactacaaagt 273  Q
    |   ||| |||| ||||| |||  |||||||||||||||    
T  54421456 ccttattagcttgcctccgaataaacgacactacaaagt 54421494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 129 - 229
Target Start/End: Complemental strand, 43734050 - 43733950
Alignment:
Q  129 agttacttcatttcattcaaaattaaggaatacaaagtaggcattacatgataaaaaatatgggggctaggattagatagtgatgccctagcaatactat 228  Q
    ||||||| ||||||||| | ||| ||||||||| ||||||    ||||| || ||| |||||||||||||||| |||||  |  || |||||||||||||    
T  43734050 agttactgcatttcattaataatcaaggaataccaagtagaagatacatcatgaaagatatgggggctaggatgagataaggcagctctagcaatactat 43733951  T
Q  229 g 229  Q
    |    
T  43733950 g 43733950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0067 (Bit Score: 91; Significance: 5e-44; HSPs: 1)
Name: scaffold0067
Description:

Target: scaffold0067; HSP #1
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 135 - 329
Target Start/End: Original strand, 10931 - 11125
Alignment:
Q  135 ttcatttcattcaaaattaaggaatacaaagtaggcattacatgataaaaaatatgggggctaggattagatagtgatgccctagcaatactatgggcaa 234  Q
    ||||||||||||| ||||| |   ||||||||||||| |||||||| |||||||||||||||||||| |||||| || || | |||||||||| | ||||    
T  10931 ttcatttcattcataattaggcggtacaaagtaggcaatacatgatgaaaaatatgggggctaggatgagatagcgaagctcgagcaatactacgagcaa 11030  T
Q  235 caccatttgcttacctcctaatttacgacactacaaagtcgggtctatcgagtaagagacttctacttttgattacaagatcaccaaattcattg 329  Q
    ||| |||||||| ||||||||  ||||||||| ||||||||||| |||| |||||||||||||||| || | |||||||||| ||||| ||||||    
T  11031 cactatttgcttgcctcctaacatacgacactgcaaagtcgggtttatcaagtaagagacttctacattgggttacaagatctccaaactcattg 11125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 90; Significance: 2e-43; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 121 - 282
Target Start/End: Original strand, 34752622 - 34752783
Alignment:
Q  121 aaaggcaaagttacttcatttcattcaaaattaaggaatacaaagtaggcattacatgataaaaaatatgggggctaggattagatagtgatgccctagc 220  Q
    ||||||||||||| ||||||||||| |||||||| | ||||||||||||  ||||||||| ||| |||||||||||||| | |||||||||||| |||||    
T  34752622 aaaggcaaagttaattcatttcattaaaaattaacggatacaaagtaggtgttacatgatgaaagatatgggggctagggtgagatagtgatgctctagc 34752721  T
Q  221 aatactatgggcaacaccatttgcttacctcctaatttacgacactacaaagtcgggtctat 282  Q
    ||||||||| ||||  | |||||||| ||||||||  |||||||||||||||||||||||||    
T  34752722 aatactatgagcaattctatttgcttgcctcctaacatacgacactacaaagtcgggtctat 34752783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 121 - 281
Target Start/End: Original strand, 9180663 - 9180823
Alignment:
Q  121 aaaggcaaagttacttcatttcattcaaaattaaggaatacaaagtaggcattacatgataaaaaatatgggggctaggattagatagtgatgccctagc 220  Q
    ||||||||||||| ||||||||||| |||||||| | ||||||||||||  ||||||||| ||| |||||||||||||| | |||||||||||| |||||    
T  9180663 aaaggcaaagttagttcatttcattaaaaattaacggatacaaagtaggtgttacatgatgaaagatatgggggctagggtgagatagtgatgctctagc 9180762  T
Q  221 aatactatgggcaacaccatttgcttacctcctaatttacgacactacaaagtcgggtcta 281  Q
    |||| |||| ||||| | |||||||| ||||||||  ||||||||||||||||||||||||    
T  9180763 aatattatgagcaactctatttgcttgcctcctaacatacgacactacaaagtcgggtcta 9180823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 125 - 282
Target Start/End: Complemental strand, 11629644 - 11629487
Alignment:
Q  125 gcaaagttacttcatttcattcaaaattaaggaatacaaagtaggcattacatgataaaaaatatgggggctaggattagatagtgatgccctagcaata 224  Q
    ||||||||| ||||||||||| |||||||| | ||||||||||||   |||||||| ||| |||||||| ||||| | ||||| |||||| |||||||||    
T  11629644 gcaaagttaattcatttcattaaaaattaacggatacaaagtaggtgctacatgatgaaagatatggggcctagggtgagataatgatgctctagcaata 11629545  T
Q  225 ctatgggcaacaccatttgcttacctcctaatttacgacactacaaagtcgggtctat 282  Q
    ||||| ||||| | |||||||| ||||||||  |||||||||||||||||||||||||    
T  11629544 ctatgagcaactctatttgcttgcctcctaacatacgacactacaaagtcgggtctat 11629487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 125 - 229
Target Start/End: Complemental strand, 10394776 - 10394672
Alignment:
Q  125 gcaaagttacttcatttcattcaaaattaaggaatacaaagtaggcattacatgataaaaaatatgggggctaggattagatagtgatgccctagcaata 224  Q
    |||||| || |||||||||||| |||||||    ||||||| ||   |||||| || |||||||| |||| |||||| |||||  ||||| |||||||||    
T  10394776 gcaaagctaattcatttcattccaaattaacatgtacaaagaagttgttacatcatgaaaaatataggggttaggatgagataaagatgcgctagcaata 10394677  T
Q  225 ctatg 229  Q
    |||||    
T  10394676 ctatg 10394672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 89; Significance: 7e-43; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 121 - 281
Target Start/End: Original strand, 10158887 - 10159047
Alignment:
Q  121 aaaggcaaagttacttcatttcattcaaaattaaggaatacaaagtaggcattacatgataaaaaatatgggggctaggattagatagtgatgccctagc 220  Q
    ||||||||||||| ||||||||||| |||||||| | ||||||||||||  ||||||||| ||| |||||||||||||| | |||||||||||| |||||    
T  10158887 aaaggcaaagttagttcatttcattaaaaattaacggatacaaagtaggtgttacatgatgaaagatatgggggctagggtgagatagtgatgctctagc 10158986  T
Q  221 aatactatgggcaacaccatttgcttacctcctaatttacgacactacaaagtcgggtcta 281  Q
    |||| |||| ||||| | |||||||| ||||||||  ||||||||||||||||||||||||    
T  10158987 aatattatgagcaactctatttgcttgcctcctaacatacgacactacaaagtcgggtcta 10159047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 127 - 198
Target Start/End: Complemental strand, 16863383 - 16863312
Alignment:
Q  127 aaagttacttcatttcattcaaaattaaggaatacaaagtaggcattacatgataaaaaatatgggggctag 198  Q
    ||||||| | ||||||||||| ||| || |||||||||||| ||  ||||| ||| ||||||||||||||||    
T  16863383 aaagttaatgcatttcattcataatcaaagaatacaaagtaagcggtacattatagaaaatatgggggctag 16863312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0996 (Bit Score: 57; Significance: 9e-24; HSPs: 1)
Name: scaffold0996
Description:

Target: scaffold0996; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 136 - 292
Target Start/End: Original strand, 1496 - 1652
Alignment:
Q  136 tcatttcattcaaaattaaggaatacaaagtaggcattacatgataaaaaatatgggggctaggattagatagtgatgccctagcaatactatgggcaac 235  Q
    |||||||||||| ||||||||| ||||||||||    ||||  || |||||||||||||||||||| | |||  || || |||||||||||||| |||||    
T  1496 tcatttcattcataattaaggagtacaaagtagaaggtacaacattaaaaatatgggggctaggatgacataaggaagctctagcaatactatgagcaac 1595  T
Q  236 accatttgcttacctcctaatttacgacactacaaagtcgggtctatcgagtaagag 292  Q
     | ||| |||| ||||| ||  ||||||||||||||||||||||||| ||| |||||    
T  1596 cctattagcttgcctccgaacatacgacactacaaagtcgggtctattgagcaagag 1652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 205 - 300
Target Start/End: Original strand, 188397 - 188492
Alignment:
Q  205 atagtgatgccctagcaatactatgggcaacaccatttgcttacctcctaatttacgacactacaaagtcgggtctatcgagtaagagacttctac 300  Q
    ||||||| || ||||||||| |||| ||||| | |||| |||  |||||||| ||||| ||||||||||||||||||   ||||||||||||||||    
T  188397 atagtgaggctctagcaatattatgagcaactctatttacttgtctcctaatatacgatactacaaagtcgggtctaataagtaagagacttctac 188492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University