View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13049_low_18 (Length: 332)

Name: NF13049_low_18
Description: NF13049
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13049_low_18
NF13049_low_18
[»] chr8 (1 HSPs)
chr8 (24-316)||(41874174-41874466)


Alignment Details
Target: chr8 (Bit Score: 260; Significance: 1e-145; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 24 - 316
Target Start/End: Complemental strand, 41874466 - 41874174
Alignment:
Q  24 agacgaggtatgggaagccaaggtagatttgtgtttgattatcatgtgttttttgtttaaattaaagggtcatggggagaccaaaattagcaattttgca 123  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  41874466 agacgaggtatgggaagccaaggtagatttgtgtttgattatcatttgttttttgtttaaattaaagggtcatggggataccaaaattagcaattttgca 41874367  T
Q  124 ttacaaataacagttgaattcactatattttatcaccgtccacaatagttctatttttcactttaacagtacccttactcattagtannnnnnnaaaatt 223  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||       ||||||    
T  41874366 ttacaaataacagttgaattcactatattttatcaccgtccacaatagttctatttttcactttaacagtacccttactcattactatttttttaaaatt 41874267  T
Q  224 aagttattgtttttggtagaatgatgtagaggagtttggtgatgattaaataataaagcatcaaattagttatttatagagaatgttatatag 316  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41874266 aagttattgtttttggtagaatgatgtagaggagtttggtgatgattaaataataaagcatcaaattagttatttatagagaatgttatatag 41874174  T

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