View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13049_low_19 (Length: 327)
Name: NF13049_low_19
Description: NF13049
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13049_low_19 |
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Alignment Details
Target: chr5 (Bit Score: 271; Significance: 1e-151; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 7 - 315
Target Start/End: Original strand, 5041187 - 5041497
Alignment:
| Q |
7 |
agagatgaagggttgatctttccagtcattgctctaggatttgctggaacttgaatagcctcacagtgaccacagaatctgcaccttgtatcacattttg |
106 |
Q |
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| T |
5041187 |
agagttgaagggttgatctttccagtcattgctctaggattttctggaacttgaatagcctcacagtgaccacagaatctgcaccttgtatcacattttg |
5041286 |
T |
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| Q |
107 |
gtggccttgatcctatctgcttcctcaccatcaccttgttatcacctaatgtctgc-gaaatcaacataaattaaattcttcctacatcacccgtcttaa |
205 |
Q |
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| T |
5041287 |
gtggccttgatcctatctgcttcctcaccatcaccttgttatcacctaatgtctgcacaaatcaacataaattaaattcttcctacatcactcgtcttaa |
5041386 |
T |
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| Q |
206 |
tttgaaaagaccgagtaaacaagttgtcggctcagtggtaagagtttgactgcaatttcaagggatatagt-aaatacctcgagaactattgtaaaatag |
304 |
Q |
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| T |
5041387 |
ttagaaaagaccgagtaaacaagttgtcggctcagaggtaagagtttgactgcaatttcaagggatatagtaaaatacctcgagaactattgtaaaatag |
5041486 |
T |
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| Q |
305 |
taatttgtgat |
315 |
Q |
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| T |
5041487 |
taatttgtgat |
5041497 |
T |
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Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 58 - 122
Target Start/End: Complemental strand, 40341947 - 40341883
Alignment:
| Q |
58 |
tgaatagcctcacagtgaccacagaatctgcaccttgtatcacattttggtggccttgatcctat |
122 |
Q |
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| T |
40341947 |
tgaatagcctcacagtgtccacatgacctacaccttctatcacattttggaggtcttgaccctat |
40341883 |
T |
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