View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13049_low_23 (Length: 298)

Name: NF13049_low_23
Description: NF13049
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13049_low_23
NF13049_low_23
[»] chr5 (4 HSPs)
chr5 (179-298)||(41970553-41970678)
chr5 (18-160)||(41970190-41970337)
chr5 (95-155)||(17501036-17501096)
chr5 (95-137)||(27725543-27725585)
[»] chr3 (3 HSPs)
chr3 (177-276)||(1238084-1238189)
chr3 (21-160)||(1237449-1237581)
chr3 (95-154)||(2990948-2991007)
[»] chr1 (3 HSPs)
chr1 (95-157)||(46937606-46937668)
chr1 (95-157)||(49825893-49825957)
chr1 (95-139)||(7210618-7210660)
[»] chr4 (2 HSPs)
chr4 (95-157)||(35522103-35522165)
chr4 (99-153)||(8520806-8520860)
[»] chr7 (4 HSPs)
chr7 (95-155)||(14821566-14821626)
chr7 (95-155)||(15268572-15268632)
chr7 (95-157)||(34925285-34925345)
chr7 (95-123)||(30900109-30900137)
[»] chr8 (2 HSPs)
chr8 (95-157)||(9112454-9112516)
chr8 (96-148)||(31107396-31107446)
[»] chr6 (1 HSPs)
chr6 (95-139)||(18270596-18270640)


Alignment Details
Target: chr5 (Bit Score: 99; Significance: 7e-49; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 179 - 298
Target Start/End: Original strand, 41970553 - 41970678
Alignment:
Q  179 attcattacttaagccgttaggtagttagaccagcagattaaatatgagaagtagacactgattcagtcacactgaacttggaacccagcagcaga---- 274  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||        
T  41970553 attcattacttaagccgttaggtagttagaccagcagattaaatatgagaagtagacactgattcagtcacactgaacttggaacgcagcagcagaaact 41970652  T
Q  275 --aatgtagaaactggtttggtgagc 298  Q
      ||||||||||||||||||||||||    
T  41970653 tcaatgtagaaactggtttggtgagc 41970678  T

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Target: chr5; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 18 - 160
Target Start/End: Original strand, 41970190 - 41970337
Alignment:
Q  18 ctgttaacattcacagaatatgaatgaaaaccttataatagatttacaaaaatcccttnnnnnnnnnnnnnnn------gctctttagtacaaaatattg 111  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||                     |||||||||||||||||||||    
T  41970190 ctgttaacattcacagaatatgaatgaaaacct-ataatagatttacaaaaatccctttttatatatatatatatatatgctctttagtacaaaatattg 41970288  T
Q  112 tgaaatagtggcgctatagcattgttgcttagcagaatttgaacaaggc 160  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  41970289 tgaaatagtggcgctatagcattgttgcttagcagaatttgaacaaggc 41970337  T

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Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 95 - 155
Target Start/End: Complemental strand, 17501096 - 17501036
Alignment:
Q  95 tttagtacaaaatattgtgaaatagtggcgctatagcattgttgcttagcagaatttgaac 155  Q
    ||||||||||| |  ||| |||||||| |||||||||||||| || |||||||||||||||    
T  17501096 tttagtacaaagtgctgtcaaatagtgacgctatagcattgtagcatagcagaatttgaac 17501036  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 95 - 137
Target Start/End: Original strand, 27725543 - 27725585
Alignment:
Q  95 tttagtacaaaatattgtgaaatagtggcgctatagcattgtt 137  Q
    |||||||||||||||||| |||||| ||| |||||||||||||    
T  27725543 tttagtacaaaatattgtcaaatagcggcactatagcattgtt 27725585  T

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Target: chr3 (Bit Score: 79; Significance: 6e-37; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 177 - 276
Target Start/End: Original strand, 1238084 - 1238189
Alignment:
Q  177 acattcattacttaagccgttaggtagttagaccagcagattaaatatgagaagtagacactga------ttcagtcacactgaacttggaacccagcag 270  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      ||||||||||||||||||||||| ||||||    
T  1238084 acattcattacttaagccgttaggtagttagaccagcagattaaatatgagaagtagacactgattcagtttcagtcacactgaacttggaacgcagcag 1238183  T
Q  271 cagaaa 276  Q
    ||||||    
T  1238184 cagaaa 1238189  T

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Target: chr3; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 21 - 160
Target Start/End: Original strand, 1237449 - 1237581
Alignment:
Q  21 ttaacattcacagaatatgaatgaaaaccttataatagatttacaaaaatcccttnnnnnnnnnnnnnnngctctttagtacaaaatattgtgaaatagt 120  Q
    |||||||||||||||||||||||||||| | |||||||||||||||||||| |||               ||| ||||||||||||||||||||||||||    
T  1237449 ttaacattcacagaatatgaatgaaaacat-ataatagatttacaaaaatctctttatatat--------gctttttagtacaaaatattgtgaaatagt 1237539  T
Q  121 ggcgc--tatagcattgttgcttagcagaatttgaacaaggc 160  Q
    |||||  |||||||||||||||||||||||||||||||||||    
T  1237540 ggcgcgctatagcattgttgcttagcagaatttgaacaaggc 1237581  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 95 - 154
Target Start/End: Complemental strand, 2991007 - 2990948
Alignment:
Q  95 tttagtacaaaatattgtgaaatagtggcgctatagcattgttgcttagcagaatttgaa 154  Q
    ||||||||||||| |||| |||||||||| ||||| || |||||| |||| |||||||||    
T  2991007 tttagtacaaaatgttgtcaaatagtggccctatatcactgttgcatagcggaatttgaa 2990948  T

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Target: chr1 (Bit Score: 47; Significance: 7e-18; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 95 - 157
Target Start/End: Original strand, 46937606 - 46937668
Alignment:
Q  95 tttagtacaaaatattgtgaaatagtggcgctatagcattgttgcttagcagaatttgaacaa 157  Q
    ||||||||||||||||||||||||||||||||||| || |||||| |||| ||||||||||||    
T  46937606 tttagtacaaaatattgtgaaatagtggcgctataacactgttgcatagcggaatttgaacaa 46937668  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 95 - 157
Target Start/End: Original strand, 49825893 - 49825957
Alignment:
Q  95 tttagtacaaaatattgtgaaatagtggcgc--tatagcattgttgcttagcagaatttgaacaa 157  Q
    |||||||||||||||||||||||||  | ||  ||||||| |||||| |||||||||||||||||    
T  49825893 tttagtacaaaatattgtgaaatagcagtgctatatagcactgttgcatagcagaatttgaacaa 49825957  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 95 - 139
Target Start/End: Complemental strand, 7210660 - 7210618
Alignment:
Q  95 tttagtacaaaatattgtgaaatagtggcgctatagcattgttgc 139  Q
    |||||||||||||||||||||||||||   |||||||||||||||    
T  7210660 tttagtacaaaatattgtgaaatagtg--actatagcattgttgc 7210618  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 95 - 157
Target Start/End: Original strand, 35522103 - 35522165
Alignment:
Q  95 tttagtacaaaatattgtgaaatagtggcgctatagcattgttgcttagcagaatttgaacaa 157  Q
    |||||| |||||||||||||||||| ||||||||| | || |||| |||| ||||||||||||    
T  35522103 tttagtgcaaaatattgtgaaatagcggcgctataacgttcttgcatagcggaatttgaacaa 35522165  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 99 - 153
Target Start/End: Original strand, 8520806 - 8520860
Alignment:
Q  99 gtacaaaatattgtgaaatagtggcgctatagcattgttgcttagcagaatttga 153  Q
    ||||||||| |||| ||||||||| |||||||||||||| | |||| ||||||||    
T  8520806 gtacaaaatgttgtcaaatagtggtgctatagcattgttacgtagcggaatttga 8520860  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 95 - 155
Target Start/End: Original strand, 14821566 - 14821626
Alignment:
Q  95 tttagtacaaaatattgtgaaatagtggcgctatagcattgttgcttagcagaatttgaac 155  Q
    ||||||||||| |  ||| |||||||| |||||||||||||| || |||||||||||||||    
T  14821566 tttagtacaaagtgctgtcaaatagtgacgctatagcattgtagcatagcagaatttgaac 14821626  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 95 - 155
Target Start/End: Original strand, 15268572 - 15268632
Alignment:
Q  95 tttagtacaaaatattgtgaaatagtggcgctatagcattgttgcttagcagaatttgaac 155  Q
    ||||||||||| |  ||| |||||||| |||||||||||||| || |||||||||||||||    
T  15268572 tttagtacaaagtgctgtcaaatagtgacgctatagcattgtagcatagcagaatttgaac 15268632  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 95 - 157
Target Start/End: Complemental strand, 34925345 - 34925285
Alignment:
Q  95 tttagtacaaaatattgtgaaatagtggcgctatagcattgttgcttagcagaatttgaacaa 157  Q
    ||||||||||||| |||| |||||| |||  ||||||||||| || |||||||||||||||||    
T  34925345 tttagtacaaaatgttgtcaaatagcggc--tatagcattgtagcatagcagaatttgaacaa 34925285  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 95 - 123
Target Start/End: Complemental strand, 30900137 - 30900109
Alignment:
Q  95 tttagtacaaaatattgtgaaatagtggc 123  Q
    |||||||||||||||||||||||||||||    
T  30900137 tttagtacaaaatattgtgaaatagtggc 30900109  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 95 - 157
Target Start/End: Original strand, 9112454 - 9112516
Alignment:
Q  95 tttagtacaaaatattgtgaaatagtggcgctatagcattgttgcttagcagaatttgaacaa 157  Q
    ||||||||| ||||||||||||||||||||||| |||| | |||| |||  |||||| |||||    
T  9112454 tttagtacagaatattgtgaaatagtggcgctacagcaatattgcatagtggaatttaaacaa 9112516  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 96 - 148
Target Start/End: Original strand, 31107396 - 31107446
Alignment:
Q  96 ttagtacaaaatattgtgaaatagtggcgctatagcattgttgcttagcagaa 148  Q
    ||||||||||||||||||||||| |  | ||||||||||||||| ||||||||    
T  31107396 ttagtacaaaatattgtgaaataat--cactatagcattgttgcatagcagaa 31107446  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 95 - 139
Target Start/End: Complemental strand, 18270640 - 18270596
Alignment:
Q  95 tttagtacaaaatattgtgaaatagtggcgctatagcattgttgc 139  Q
    |||| |||||||||||||||||||| ||| |||||||| ||||||    
T  18270640 tttaatacaaaatattgtgaaatagcggcactatagcactgttgc 18270596  T

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